Pandoraea commovens: NTU39_20630
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Entry
NTU39_20630 CDS
T08365
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03030
DNA replication
pcom03430
Mismatch repair
pcom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NTU39_20630 (dnaE)
03430 Mismatch repair
NTU39_20630 (dnaE)
03440 Homologous recombination
NTU39_20630 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcom03032
]
NTU39_20630 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_20630 (dnaE)
Enzymes [BR:
pcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NTU39_20630 (dnaE)
DNA replication proteins [BR:
pcom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NTU39_20630 (dnaE)
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NTU39_20630 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UVA82215
LinkDB
All DBs
Position
complement(4583359..4586958)
Genome browser
AA seq
1199 aa
AA seq
DB search
MRPMSEPRFVHLRLHSEYSIADGIVRLDDVVKAAAKDGQGALALTDLANMFGAIRFYKEA
RGKGVKPIIGCDAWITNPADRDKPSRLLLLARDREGYLNLCQLLSKAWLGNQYRGRAEIE
PSWLQPDGLARGLLALSGAQMGDVGAALAAGNPDLALQCAKHWESVFPGAFYIELQRTGQ
QGMETYVQQAVQLAAKAGLPVVATHPIQFMTSDDFTAHEARVCISEGEMLGNARRVRRFT
QDQSFRTQDDMLAAFEDVPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQ
LSKEGLETRLAQLFPDEAERDKQRPEYYKRLDFETGTIIKMGFPGYFLIVADFIQWAKNN
GVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQDGRDRV
IQYVKEKYGADAVSQIATFGSMAAKAAVRDVGRVLDLGYNFVDGISKLIPFKPGKHVTID
DALKEEPQLAERFQTEDEVKQLIELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQG
SGEDASGVVSQYDKDDVEAVGLVKFDFLGLTTLTILNWAERYIKRLHPEMADWSLEQVSL
TDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKTEYPDPRVEPVLQETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAE
EMAEHREIFAKGAAENGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYEDCLATANGLGVLPPDVNVSAYRFEPADSKTVRYGLG
AIKGSGQSAIEEILRAREGKPFTDLFDFCARIDRRVVNRRTIEALIRAGAFDSIHDNRAQ
LMASVPMAMEAAEQASAAANQVSLFDLGDESLQAPLELADEPAWTDKRKLQEEKQALGFY
LSGHMFDSYSDEVRRFVRTRIRDLSEGRDRLVAGVISSMRTMMTQRGKMLIVQLDDGTAT
LEVTIFNEQFEANKHLFKEDELLIVHGNARPDSFTGGLRFTVESLMDLGRARARFARALK
LSFNGNADWTRLRATLQPHCTMYRVAATAGAGGGGGFNGGGGFNGGGGGGGGGFGRRNGN
GNGDGDADKQNGLPVHIVYRRTDAECESRLGDEWKVQPGDELLGELRQWLTTDSVQVVY
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atacggcccatgtcagaacctcgcttcgtccacctccgtctccactccgaatactcgatc
gccgatggcatcgtgcggctcgacgacgtcgtcaaggccgccgccaaggatggtcagggc
gcgctcgcgctcaccgacctcgcgaacatgttcggagccatccgtttctacaaggaagcc
cgtggcaagggcgtcaagccgatcatcggttgcgacgcctggatcacgaatccggccgac
cgtgacaagccctcgcgtctgttgctgctcgcgcgcgaccgggaaggctatctgaacctg
tgccagttgctgtccaaggcctggctcggcaaccagtaccggggacgcgcggagatcgag
ccgtcgtggcttcagcccgacggcctcgcccgtggcctgctggcgctctccggcgcgcag
atgggcgacgtgggcgcagcgttggccgcaggcaaccccgatctggcgttgcaatgtgcg
aaacactgggagagtgttttcccgggtgcgttctacatcgaactgcaacgcactggtcag
cagggcatggagacgtacgtccaacaggcggtgcaactggcggcgaaggccgggctcccg
gtcgtcgccacgcatcccattcagttcatgacctccgacgatttcacggcgcacgaggcg
cgcgtgtgtatctcggaaggtgagatgctgggcaatgcccgccgggtgcgtcgtttcacg
caggatcaaagtttccgcacgcaagacgacatgctggccgcgttcgaggacgtgccgtcc
gcgctggccaacaccgtcgagatcgccaagcgctgcaacctgacgctcgaactcggcaag
ccgaagctgccgttgtttcccacgccggacggcatgtcgctcgacgactatctcgtccag
ctgtccaaggaaggcctggagacgcgtctcgcgcagctgttcccggacgaagccgagcgc
gacaagcagcggcccgagtattacaagcggctcgatttcgagaccggcacgatcatcaag
atgggcttcccgggttacttcctgatcgtggccgacttcatccagtgggcgaagaacaac
ggcgtgccggtgggcccgggccggggttccggtgccggttcgctcgtcgcctatgcgctg
ggcattaccgacctcgacccgctcaagtacaacctgctgttcgagcgcttcctgaacccg
gaacgtgtgtcgatgcccgacttcgacatcgacttctgtcaggacggccgcgaccgcgtc
attcaatacgtgaaggaaaagtacggcgcggacgccgtctcgcagatcgccaccttcggc
tcgatggccgccaaggcagcggtgcgcgacgtgggccgcgtgctcgatctcggctacaac
ttcgtagacggtatctcgaagctgatcccgttcaagccgggcaagcacgtcaccatcgac
gacgcgctcaaggaagaaccccaactcgccgaacgcttccagacggaagacgaggtcaag
cagctgatcgagctggcgcagcgggtggaagggctcacgcgtaacgtcggcatgcacgcg
ggcggtgtgctgatcgccccgggcaagctcaccgatttctgcccgctctacacgcagggc
agcggcgaagacgccagcggtgtggtgagtcagtacgacaaggacgacgtggaagccgtc
ggtctggtgaagttcgacttcttggggctgaccacgctcacgatcctgaactgggccgag
cgctacatcaagcgcctgcatccggagatggcggactggtcgctcgaacaggtctcgctc
acggacccggccgcgttcagcattctcaagaaggccaacacggtcgccgtgttccagctg
gaaagtcgcggcatgcagggcatgttgaaggacgctcagcctgaccgcttcgaggacatc
atcgcgctggtggcgttgtatcgtccgggtccgatggacctgattccgagcttctgcgcg
cgtaagcacggtcgcgagaagacggaatatccggatccgcgcgtggagccggtgcttcag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggc
ggatactcgctcggtggcgccgacttgctgcgccgcgcgatgggtaagaagaaggccgag
gaaatggccgagcaccgcgagattttcgccaagggtgccgccgagaatggcctgacgcgc
gaaaagtcggacgaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaag
tcgcacgccgccgcttatgcgctgctcgcctactacaccgcgtggctgaaggcccaccat
cccgccgaattcatggccgccaacatgagcttggccatggacgacacggacaaggtcaag
attctctacgaagattgccttgccacggccaacggcttgggcgtgctgccgccggacgtc
aacgtctcggcgtatcgttttgaaccggcggactcgaagaccgtgcgttacggtctgggc
gccatcaaaggcagcggtcagtcggccatcgaggaaattctgcgcgcccgtgagggcaag
ccgttcaccgacctgttcgacttctgcgcgcggatcgaccgtcgcgtggtgaaccgtcgc
acgattgaagcgctgattcgcgcgggcgcgttcgattcgatccacgacaaccgggcgcag
ttgatggcgtcggtgccgatggcgatggaagcggccgagcaggcgagtgctgccgccaat
caggtcagcttgttcgatctgggcgacgaaagcctgcaagcaccgctggaactggccgac
gaaccggcgtggaccgacaagcgcaagctgcaggaggagaagcaggcgctcggcttctac
ctgtcgggtcacatgttcgactcgtattcggacgaagtgcgacgcttcgtgcgcacgcgt
attcgcgatctgtccgaagggcgtgatcgtctcgttgctggcgtgatctccagcatgcgc
accatgatgacgcagcgcggcaagatgctgatcgtgcagctcgacgacggtacggccacg
ctcgaagtcacgatcttcaacgagcagttcgaggcaaacaagcacctgttcaaggaagac
gaactgctgatcgtgcacggcaatgcgcgaccggacagctttacgggcggcctgcgtttc
accgtcgaaagcctcatggacctcggccgcgcgcgtgcgcgcttcgcccgggcgctcaag
ctgtcgtttaacggcaacgccgactggacgcgtcttcgcgccacgttgcagccgcactgc
acgatgtaccgcgtggccgccacggcgggcgcgggcggtggtggtggcttcaatggcggc
ggtgggtttaacggtggtggaggtggcggtggcggaggtttcggccgacgtaacggtaat
ggcaacggcgatggcgacgcggataagcaaaacggcctgccggtgcatatcgtctatcgc
cgcacggacgccgagtgcgagtcgcgtctcggcgacgagtggaaggtgcagcctggcgac
gaattgctgggcgagcttcgtcagtggctcaccaccgactcggtacaagtcgtctattga
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