Pandoraea commovens: NTU39_20650
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Entry
NTU39_20650 CDS
T08365
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTU39_20650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcom03019
]
NTU39_20650
Enzymes [BR:
pcom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NTU39_20650
Messenger RNA biogenesis [BR:
pcom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NTU39_20650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
UVA78442
LinkDB
All DBs
Position
complement(4590459..4591967)
Genome browser
AA seq
502 aa
AA seq
DB search
MADVNAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRSYACHTALRNTVV
FGGVDMNPQKDALRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNDIKRLASSYLTNPVTIEVARRNATADTVEQVVYEVDE
DDKRAAVVQILNERDLKQVIVFVNSKIGASRLARQLERDGIVTAAIHGDKSQNERMQALE
AFKQGGIRALVATDVAARGLDISDLPGVINYDLPYNPEDYVHRIGRTGRAGASGEALSLC
APDERKQLVEIEKLIKRELKRGELVMERRSRSRDDRGDRYERSDRGERAERGERGDRGER
HSRHDGLRAGRSGGSTPRRVRPEDEFFYKPYEPSPSAGESQRDHRASHDAAAPTTFGAPS
EKAPKRQVAALLAGFPRKAQDR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaaatgctgttccgacccccggcttcgatagctttgggctgcatgcggac
atcttgcgggccatcgccgagcagggctacacccaaccgaccccgattcaggcacaggcc
attccggtcgtgctgtccggtcgcgacgtcatgggtgccgcacaaacggggaccggcaag
accgccagcttctcgctgccgatcatccagcgtctgctgcccgatgccaacacgagcgca
tcgcccgcccgtcacccggtgcgtgcgctgatcctcacgccgacgcgcgaactcgccgat
caggtggccgacaacgtgcgttcgtacgcctgtcacacggcattgcgtaacaccgtggtg
tttggcggcgtcgacatgaatccgcagaaggacgcgctgcgccgcggcgtcgaaattctc
atcgccacgccgggccgtctgctcgatcacgtcgaacagaaaacggtgaacctgagccag
gtgaagatgctggtgctcgacgaagccgaccgcatgctcgacatgggcttcttgccggat
ctccagcgcattctgaatttgctgccgaagcagcgccagacgctgctcttctcggccacg
ttctcgaacgacatcaagcggctcgcatcgagctacctcacgaacccggtcacgatcgaa
gtggcgcgtcgcaatgcgacggccgatacggtcgagcaagtcgtctacgaagtggatgaa
gacgacaagcgcgcggctgtggtccaaattcttaacgagcgcgatctgaagcaggtcatc
gtgttcgtgaacagcaagatcggcgcgagtcgtctggcgcgtcagcttgagcgcgacggc
atcgtgacggccgccattcacggcgacaagtcgcagaacgagcgcatgcaggcgctcgaa
gccttcaagcagggcgggattcgcgcgcttgtggcgaccgacgtcgcggcacgcggtctg
gacatctcggatctgccgggcgtgatcaactacgacctcccgtacaacccggaagactac
gtgcaccgcatcggccgtacggggcgtgctggcgcgtcgggagaagcgctctcgttgtgc
gcaccggacgagcgcaagcaactcgtggaaatcgagaagctgatcaagcgcgaactcaag
cgtggcgagctggtgatggagcgccgcagccgttcgcgtgacgaccgtggcgatcgctac
gagcgcagcgaccgcggtgagcgtgcggaacgtggcgagcgtggtgatcgcggggagcgc
cacagccgtcacgatggcctgcgcgctggccgtagcggtggcagcacgccgcgtcgcgtg
cgtccggaagatgaattcttctacaagccgtacgagccgtcgccgtcggccggtgagtcg
cagcgcgaccatcgtgcatcgcatgacgctgctgcaccgacgaccttcggcgcgccgtcg
gagaaggcccctaagcgtcaggtcgctgcactgctcgcgggcttcccgcgcaaggcacag
gaccgctaa
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