Pandoraea commovens: NTU39_22395
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Entry
NTU39_22395 CDS
T08365
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTU39_22395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcom03019
]
NTU39_22395
03009 Ribosome biogenesis [BR:
pcom03009
]
NTU39_22395
Enzymes [BR:
pcom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NTU39_22395
Messenger RNA biogenesis [BR:
pcom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NTU39_22395
Ribosome biogenesis [BR:
pcom03009
]
Prokaryotic type
rRNA processing factors
NTU39_22395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UVA78762
UniProt:
A0ABY5QD91
LinkDB
All DBs
Position
4973184..4976504
Genome browser
AA seq
1106 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAIEGASHNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARSLEEDPAGYSKKKEDARPRQEAAVKGITP
EQPAPAAQPRPEPVAATAPAAAAPATGGFFGFIKRLFGIGAAAPAPVKAEEPTKPTARPP
RERHERPHQQNRNRRGNARDENKSGKDNAGQPAREGREGRDGRGARPERAERADRGERNE
RNERGDRNERQERQERQEGRDKRERDDVQRQPAQDVRAEEGREPREGRERGSRRERGERR
DRRQAEGAEGQQAVTQRAVPAAPLNAEQEELDQDRLTAQVEGAPQTGEEGEQGGEERRRS
RRRGRRGGRREREAGESQLNADGEQVEGEALEAVEGTRAPVLTDESAENAATDALVRATT
PAIPAPAAPLAHAEPTPVRAAPVEAPAPVATVTEAAPAATPEVPSQSVSEPISEPVTQAL
TIAPVAPVNVAPLPTAEVAAAPIVPPVSAPLPVATPAPAQPTVPAEALTEIAATAAASSA
PAEAAPAPVAESAQPTTQAPTQSTPPAPVQMVETAKPVEVAPAPVAPAAPAAPVVMEAAA
AVTEVVTQKAAPVAVAPTLERGALESTLESVGLVWVHTDADKHRAAKEAAAQAAPAPHVP
RERRPSTPLNSGPMEQVETHSTNHTA
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaacgccacgcagcaggaagaactgcgcgtggcaatcgtcgat
gggcaaaaactcatcgacatcgatatcgagactgccggacgcgaacagcgtaaaggcaat
atctacaagggtgtcatcacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggccgccacggcttcctgccgttcaaggaagtcgcccgcgcgtacttccgcgaa
ggtgccgatgtgcgcaatgcgcgcattcaggacgccctctccgaaggccaggaactcatc
gttcaggtcgaaaaggaagagcgcggcaacaagggtgcagccctcacgacgttcatttcc
ctggctggccgctatctggtgctgatgcctaacaacccgcgtggcggtggtgtttcgcgt
cgtatcgaaggcgaagaccgtcaggaactgcgcgagacgatgggccagctcgaactgccc
gaaggcatgagcatcatcgcccgcaccgcaggtatcggccgctcggccgaagaactgcag
tgggacctgaactacctgctgcaactctggcacgccatcgaaggcgcgtcccacaacatc
gaattgccgcgcgattcggccctgatctatctcgaatcgagcctggtcatccgcgccatc
cgcgactatttccagccggatatcggtgaaatcctcatcgatacggaagaaatctccgaa
caagcacgcaacttcatgcaggtggtcatgcccgatcacctcaaccgcgtgaagcagtac
cgcgacgacgtgccgctgttctcccgtttccagatcgaacatcagatcgagacggcttac
tcgcgtcaggtgccgctgccctcgggcggcgcgatcgtgatcgatcacaccgaagcgctc
gtttccatcgacgtgaactcggcgcgcgcgaccaagggcgccgatatcgaagaaaccgcc
ctgcgcaccaacctggaagccgccgacgaagtcgcgcgccagttgcgtctgcgcgatctc
ggcggtctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggatgcgctcaagcacgaccgtgcacgcgtccagatgggcaagatc
tcgcgtttcggcttgatggagctgtcgcgtcagcgtctgcgtccgtcgctgtcggaaggc
acgcacgtgacttgcccgcgctgcaacggcaccggccacatccgcgatgccgaatcgtcg
gcactgcaagtcctgcgcatcatccaggaagaggcaatgaaggagcacacggcagcgatc
cactgccaggtgccggtcgaagtctcggcgttcctgctcaacgaaaagcgtcaggaaatc
aataagatcgaagcgcgcttcaaggttggcgtgctgctgatcccgaacaagcacctcgag
acgccgcattacaagctggagcgcctgcgcttcgacgatccgcgtctggatgccccgaag
gccagctacgcgctcgccgaagaggctgcacgctcgctggaagaagatccggccggctac
agcaagaagaaagaagatgcgcgtccgcgtcaggaagccgcagtcaagggcatcacgccc
gagcaaccggcaccggccgcacaaccgcgcccggaacctgtcgccgcgaccgcaccggcc
gcagccgcaccggccaccggtggtttcttcggtttcatcaagcgtctgttcggtatcggc
gctgccgcgcccgcaccggtcaaggccgaagagccgaccaagccgacggcacgtccgccg
cgcgagcgccatgagcgtccgcatcagcaaaaccgcaatcgccgtggcaatgcccgcgac
gagaacaagtcgggcaaggacaacgccggccagccggcgcgtgagggccgtgagggccgt
gacggtcgtggcgcacgtccggaacgcgcagaacgtgcggaccgtggtgagcgcaatgaa
cgcaacgaacgtggcgaccgtaatgaacgccaggaacgccaggaacgtcaggaaggccgc
gacaagcgcgagcgcgacgacgtccagcgtcaaccggctcaggacgtgcgtgccgaggag
ggtcgtgagccgcgtgaaggccgcgaacgtggcagccgtcgtgaacgtggcgagcgtcgt
gatcgtcgtcaggctgaaggggccgaaggccagcaagccgtgacgcaacgcgcagtcccg
gcagcaccgctgaacgccgagcaggaagaactggatcaggatcgtctgacggctcaggtc
gaaggcgcgccgcaaacgggtgaagaaggcgagcaaggcggtgaagagcgtcgccgcagc
cgtcgtcgcggtcgtcgtggtggccgtcgtgagcgcgaagccggtgaatcgcaactgaac
gccgacggcgagcaagtcgaaggcgaagccctggaagcagtcgaaggcacgcgtgcaccg
gtgttgacggacgaatccgccgagaacgcggcgaccgatgccctggtccgtgcgacgacg
ccggccattccggcaccggccgcaccgctggctcacgcagaaccgacgccggtacgcgcc
gcgccggtcgaagccccggcacctgtcgccacggtgacggaagccgccccggccgcaacg
ccggaagtgccgtcgcagtcggtttcggagccgatttcggaacctgtcacgcaagccctg
acgatcgcaccggtcgcaccggtcaacgtcgcaccgctgccgaccgctgaagtggctgcc
gcaccgatcgtgccgccggtcagcgctccgctgccggtcgcgacgccagccccggctcag
ccgacggttccggccgaagccctgacggagattgccgccacggcagctgcgtcgagcgct
ccggcagaagccgcaccggctccggtcgccgaatcggctcaaccgacgacgcaagcgccg
acgcaatcgacgcccccggcaccggtccagatggtcgaaaccgccaagccggtggaagtc
gcaccggcccccgttgcaccggcagcccctgcggcaccggtcgtgatggaagccgctgct
gcggtgacggaagtcgtgacgcagaaggctgccccggtggcggtggccccgacgctggag
cgcggcgcgctggaatcgacgctggaaagcgtgggtctggtctgggtccatacggacgcc
gacaagcaccgtgccgccaaggaagccgctgcgcaggcagcaccggcaccgcacgtgccg
cgtgaacgccgcccgtccacgccgctcaacagcggtccgatggagcaggtggaaacgcac
tcgacgaaccacactgcttaa
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