Pandoraea commovens: NTU39_23925
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Entry
NTU39_23925 CDS
T08365
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pcom
Pandoraea commovens
Pathway
pcom00470
D-Amino acid metabolism
pcom00550
Peptidoglycan biosynthesis
pcom01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NTU39_23925 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NTU39_23925 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pcom01011
]
NTU39_23925 (murD)
Enzymes [BR:
pcom01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
NTU39_23925 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pcom01011
]
Precursor biosynthesis
Amino acid ligase
NTU39_23925 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
DUF364
2-Hacid_dh_C
AlaDh_PNT_C
Motif
Other DBs
NCBI-ProteinID:
UVA79031
LinkDB
All DBs
Position
complement(5309257..5310783)
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AA seq
508 aa
AA seq
DB search
MFGEKFGESWQPRVLILGLGESGLAMARWCARYGCRVRAADTRFASSETPPNVATLRIDA
PQAEFVGGAFAGQIDALLDDIELIGISPGLSPLGEDMTALLAEAAERGVPVWGEIEFFAQ
ALRHMQSTSGYAPKVLAITGTNGKTTTTSLTGLLCRRAGKRTAVAGNISPSALDRLSECI
ADATLPDVWVLELSSFQLETTHSLAPDAAAVLNITQDHLDWHGDMDAYARAKARIFGENT
VRVLNRDDARVIAFASPEANVVTFGTGKPDAVGDFGLEMEGGMWWLVEGYTRDDAPPAPK
RRKAGTPEATVEVLGKRLMPADALRIRGQHNAANALAALALARAIDLPLAKLLHGLREYP
GEPHRVQLVATINEVEFYDDSKGTNVGATVAAITGLEKKLLLILGGDGKGQDFSPLANPV
AHHARAVLLIGRDAPLLREALTDTGVDLIDAATLEDATREAARLAQPGDAVLLSPACASF
DMFRNYEHRANVFRDTVVDLAADAGVML
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
gtgttcggcgagaagtttggtgaatcctggcaaccgcgtgtcctgatcctgggtctggga
gagtccggcctggcgatggcgcgttggtgcgcgcgttacggctgccgagtgcgtgcagcc
gacacgcgctttgcgtcgtcggagacaccgccgaacgtggcgaccctgcgcatcgacgcg
ccgcaagccgaattcgtgggcggcgcattcgccggtcagatcgacgcgttgctcgacgac
atcgaacttatcggcatcagcccgggcctctcgccgctcggcgaagacatgacggcgctg
ctggccgaggcggccgagcgcggcgttccggtgtggggcgaaatcgagttcttcgcgcag
gccttgcgtcacatgcagtcgacgagcggttacgcgccgaaggtgctcgcgattaccggc
acgaacggcaagaccacgacgacgagtctcaccgggttgctgtgccgccgcgcaggcaag
cgtacggcggtggcgggcaacatcagcccgtcggcgctcgaccgtctgagcgagtgcatc
gccgacgccacgctccccgacgtctgggtcctcgaactctccagcttccagttggagacg
acgcattcgctcgcccccgatgcggcggccgttctcaatatcacgcaagaccatctggac
tggcacggcgatatggacgcctacgccagggccaaagcacgcatcttcggtgagaacacc
gtgcgcgtgctcaatcgcgacgacgcccgtgtgatcgccttcgcgtcgccagaagccaac
gtggtgaccttcggcacgggcaagcccgacgccgtgggcgacttcggtctggagatggaa
ggcggcatgtggtggctggtcgagggttacacgcgcgacgacgcgccgcccgcgcccaag
cgtcgtaaggccggcacgccggaagcgaccgtcgaggtgctgggcaaacgcctgatgcca
gctgacgcgttgcgcatccgcggtcagcacaacgcggcgaacgccctggcggcgctcgca
ctcgcgcgcgcgatcgatctgccgctggccaagctgctgcacggcctgcgcgagtatccg
ggcgagccgcatcgtgttcagctcgtcgctacgatcaacgaagtcgagttctacgacgac
agcaagggcaccaacgtcggcgcgacggtcgcggcgattacggggctcgaaaagaagctg
ctcctgattctcggcggcgacggcaaggggcaggacttctcgccgctggccaatccggtc
gcgcatcacgcgcgcgcggttctgctgatcggtcgcgacgcgccgctgctgcgcgaagcg
ctcacggacaccggcgtcgatctgatcgacgccgcgacgctggaagacgccacacgcgaa
gccgcccgtctggcgcagcccggcgatgccgtgctgctctcgccggcctgcgcgagcttc
gacatgttccgcaactacgagcatcgcgcaaacgtgtttcgcgacaccgtggttgatctg
gccgccgacgcgggggtgatgctatga
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