Pandoraea commovens: NTU39_24510
Help
Entry
NTU39_24510 CDS
T08365
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pcom
Pandoraea commovens
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcom03000
]
NTU39_24510
Transcription factors [BR:
pcom03000
]
Prokaryotic type
Helix-turn-helix
Other families
NTU39_24510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
HTH_8
Sigma54_activ_2
GAF
HTH_30
PAS_4
AAA_5
HTH_23
HTH_50
HTH_29
HTH_22
PAS_9
HTH_7
HTH_psq
HTH_20
AAA_2
RWP-RK
HTH_28
HTH_17
HTH_38
HTH_1
Diguanyl_cycl_sensor
HTH_Tnp_1
AAA
AAA_16
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UVA79126
UniProt:
A0ABY5QE94
LinkDB
All DBs
Position
complement(5439790..5441739)
Genome browser
AA seq
649 aa
AA seq
DB search
MPASTQAAHARRVLNVAQGHSPSGSVATDPNIASSWRRCLDTHALDPGARMAPRVLESSQ
LRERRSAMERLRNVSMPVLERLQRQLMNPRQAVLLTAPDGVIVDSRLHDGTRDDFHRAGL
WPGADWSESCEGTNGIGTCAVERAPVIICQQDHFRALHTPLTCTASPVFAPQGDLLAVID
VSSTSTDLTRQSQFHTLALVNLSAKVVESEYFFQHYRDEWLLQWQEQADHLGGFAQALLA
FDDAGRVLAANQSALNCLGVTRDALVGTRVDRWFVQTLDALLARAHPSPSTCWPLHANTG
ANAGESLLAMLRAPARVLRRAPSVSRPVPEVLTEPFSDPTLARAFSKACRVFAHDVPVLI
RGETGSGKEVFARAVHAASARSGGPFVALNCAAIPESLIESELFGYVGGSFTGARKEGMT
GKLWQANGGTLFLDEIGDMPFAMQTRLLRVLEERMVSPLGGGEPVPLDIRVLSATHRDLS
ERIEERLFREDLFYRLSGLEVTVPPLREREDKAEVIERLFTQAEVSGHGPAMHVTPAALD
RLCHHTWPGNVRQMRSVIRTLVALSENGVVTVDDLPDELREAGIAVADVSPSDSTTDGLS
QAPLEAAERQALRAALDACQGQVSAAARRLGVSRNTLYRKLRRFGLLRG
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgccagccagtacgcaagccgcacacgcacgccgtgtgctgaacgtcgcacagggccat
tcgccatcgggctcggtggcgaccgacccgaacatcgccagttcgtggcggcgctgcctc
gacacgcacgcgctcgacccgggcgcacgcatggcgccgcgcgtgctcgaatcctcgcaa
ttgcgcgaacgccgcagtgcgatggaacgcctgcgcaacgtctccatgccagtgttggaa
cgtctgcaacgtcagctgatgaacccgcgtcaggccgtgttgctcaccgccccggacggc
gtgatcgtcgactcacgtctgcatgacggcactcgcgacgacttccatcgcgccgggctg
tggccgggggcggactggagcgagtcttgcgagggcaccaacggtatcgggacgtgtgcc
gtcgagcgcgcgcccgtcatcatctgtcagcaggatcactttcgcgcactgcatacgccg
ctcacttgcacggcgagtccggtgtttgcgccgcagggcgatctgctggcggtgatcgac
gtgtcctccaccagtacggatctcacgcgtcagagtcagtttcatacgctggcgctcgtc
aatctgtcggcgaaggttgtcgagagcgagtatttcttccagcactatcgcgacgaatgg
ctgctgcaatggcaagagcaagccgaccatcttggtgggttcgcgcaggcgctgctcgcg
tttgacgatgccgggcgcgtgctggccgcgaatcaaagcgcactgaattgtcttggcgtg
acgcgcgacgcgctggtgggcacgcgcgtggaccgatggttcgtgcagacgctcgacgcc
ctcctcgcgcgggcgcatccgtcgccgagtacgtgctggccgttgcacgccaataccggt
gcgaacgccggggagtcgttgctggcgatgctgcgcgcacctgcacgtgtgctccggcgt
gcgcccagtgtgtcgcgccctgtgccggaggttctcactgagccgttctcagatcccacg
ctggcgcgcgcgttctcaaaggcatgccgagtcttcgcgcacgacgtgcccgtgctgatt
cgtggtgaaacaggtagcggaaaagaagtgttcgcgcgcgcggtacacgcggcgagcgca
cgttcgggcgggccgttcgtcgcgctgaattgtgcggcgattcccgagtcgctgatcgaa
agcgagttgttcggctacgtgggcggcagcttcaccggcgcgcgcaaggaagggatgacg
ggcaagctgtggcaggcgaacggcggcacgttgtttctcgacgagatcggcgacatgccg
ttcgcgatgcaaacgcgtctgctgcgcgtgctggaggagcggatggtgtctccactgggc
ggtggcgaaccggtgccgctcgacattcgcgtgctgagtgccacgcatcgcgatctctcc
gaacgcatcgaagagcgcttgtttcgcgaggatctgttctatcgcctgagcgggctcgaa
gtcacagtgccgccgctgcgcgagcgcgaggataaggcggaggtgattgaacgactgttc
actcaggcggaagtgtctggccatggccccgcaatgcatgtgacgcccgccgcgctcgac
cggttgtgtcatcacacgtggccggggaatgtgcgtcagatgcgcagcgtcattcggacg
ctggtggcgctcagcgagaatggcgtcgtcaccgttgacgatctgccggacgaattgcgc
gaagcgggaatcgcggtggcggatgtttcaccgtccgattcaacaaccgacggattgtcc
caggcaccgctggaggcggccgagcgtcaggcgctgcgtgcggcgctcgacgcctgtcag
gggcaggtaagtgccgcggcgcgacggctcggcgtgagccgcaacacgctgtatcgcaag
ctcaggcgcttcgggttgctgcgcgggtga
DBGET
integrated database retrieval system
