Pandoraea commovens: NTU39_24980
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Entry
NTU39_24980 CDS
T08365
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NTU39_24980 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcom03021
]
NTU39_24980 (rpoA)
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_24980 (rpoA)
Enzymes [BR:
pcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NTU39_24980 (rpoA)
Transcription machinery [BR:
pcom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NTU39_24980 (rpoA)
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NTU39_24980 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
UVA79211
LinkDB
All DBs
Position
complement(5553156..5554133)
Genome browser
AA seq
325 aa
AA seq
DB search
MQTSLLKPKIIAVEPVGEHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG
VVHEYSTIDGVQEDVVNFLLNLKGVVFKLHNRDEVTVTLRKDGEGVVRASDIEVPHDVEL
INPDHVIAHLAKGGKLDVQIKIEKGRGYVPGNVRRYGDESAKVIGRIVLDASFSPVKRVS
YAVESARVEQRTDLDKLVMNIETNGVVSPEEAIRQSARILVDQLSVFAALEGTEAASEAP
SRAPQIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI
KEVLASRGLTLGMKLENWPPAGLEK
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccagtttgttgaagcccaagattattgcggttgagccggtcggtgagcatcac
gccaaagtcgtgatggagccgttcgaacgtggctacggccacaccttgggcaacgcgctt
cgccgcgtgctgttgtcatcgatggtgggctacgcgccgaccgaagtgacgatcgctggc
gttgtgcatgaatattccaccatcgatggtgtccaggaagatgtcgtcaacttcctgttg
aacctcaagggtgtcgtgttcaagctgcataaccgtgacgaagtcaccgttacgctgcgc
aaggatggtgaaggtgtggtgcgcgcttcggatatcgaagtgccgcatgatgtggaactg
atcaaccccgatcacgtgatcgcgcatctggcgaagggcggcaagctcgacgttcagatc
aagatcgagaagggtcgtggttatgtcccgggtaacgtgcgccgttatggcgacgaatcg
gccaaggttatcggccgtatcgtcctcgacgcgtcgttctcgccggtcaagcgtgtgagc
tacgcggtcgaatcggcccgtgtggagcagcgtacggacctggacaagctcgtgatgaac
atcgaaaccaacggtgtggtatcgccggaggaagcgatccgtcaatcggctcgcatcctc
gtcgaccaactgtcggtgttcgctgcgctggaaggcacggaagccgccagcgaagcgccg
tcgcgtgcgccgcagatcgatccgatcctgctgcgtccggtggacgatctcgagttgacg
gtgcgttcggccaactgcctgaaggccgaaaacatctactacatcggcgacctgatccag
cgtaccgagaacgaattgctcaagaccccgaacctgggtcgcaagtcgctcaacgagatc
aaggaagtgcttgcctcgcgtggtctcacgctcggcatgaagctcgaaaactggccgccg
gctggtctcgagaagtaa
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