Pandoraea commovens: NTU39_25255
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Entry
NTU39_25255 CDS
T08365
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NTU39_25255 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcom03021
]
NTU39_25255 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_25255 (rpoC)
Enzymes [BR:
pcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NTU39_25255 (rpoC)
Transcription machinery [BR:
pcom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NTU39_25255 (rpoC)
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NTU39_25255 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
UVA79265
UniProt:
A0A5E4ZBX5
LinkDB
All DBs
Position
complement(5602772..5606983)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVQQDEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVLEPGMTPLKRCQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSIDIDAQVEHLRAELQATGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGVATTIKAAKKEVENQTAVVWDILEEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRDKINGKGEGLSFIDVSEVLRAYDNK
EVELASRVNVRITEYLVDAETGEKTPKITLYPTTVGRAILSEILPPGLPFSVLNKSLKKK
EISKLINTAFRRCGLRETVIFVDKLMQSGFKLATRAGISICVDDMLVPTKKEELIGEASK
KVKEYDRQYMSGLVTSQERYNNVVDIWGATGDAVGKAMMEQLSKEKTTDRDGNVVDQESF
NSIYMMADSGARGSSAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALRDRI
LGRVAVADVVNPETQETVYEAGTLLDEDIVENIEALGIDEVRVRTPLTCDTRFGLCALCY
GRDLGRGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSNGTVR
FTATMRYVTNGRGEQIAISRSGEVLITDDHGRERERHKVPYGATLLQLDGAQVKAGAQLG
TWDPLTRPIITEHGGFAKFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPASKNVRPQV
KLLDENGVEVKIPGTDHPVTIGFQVGALITIKDGQQVPVGEVLARIPTEAQKTRDITGGL
PRVAELFEARAPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIPKEKQVLVH
DGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITDNGDTRFIIGEQVERSDMLYENDAMNAADKRPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKARKARESSDRER
HDQIALEEAFAPIPTSVEEPTAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccagcaggacgaacagttcgacgcgatc
aagatcggtctggcttcgccggacaagatccgctcgtggtcgttcggtgaagtgaagaag
ccggagacgatcaactaccggaccttcaagcccgaacgcgacggtctgttctgcgccaag
atcttcggtccgatcaaggactacgagtgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgtgag
cgcatgggccacatcgaactggcttcgccggtcgcgcacatctggttcctgaagtcgctc
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcatacgtggtcctcgagccgggcatgacgccgcttaagcgttgccagatcatg
accgaggaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgctcgatcgacatcgacgcacaggtcgagcat
ctgcgcgccgagctgcaagccacgggctcggaagccaagatcaagaagtacgccaagcgc
ctgaaggttcttgaggcattccagcgctcgggcatcaagcccgagtggatggtgctcgaa
gtcctgccggtgctcccgcccgagctgcgcccgctggtgccgctcgacggtggccgcttc
gcgacctcggacctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgagctcaaggccccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtggactcgctgctcgacaacggccgtcgcggtaaggcgatgaccggtgcgaac
aagcgcccgctcaagtcgctggccgacatgatcaagggtaagagcggtcgtttccgtcag
aacttgctgggtaagcgcgttgactactcgggccgttcggtgattaccgtgggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactcttcaagccgttc
atcttccacaagctggaagtgatgggcgtggccacgaccatcaaggccgcgaagaaggaa
gtcgagaaccagacggcggtggtgtgggacatcttggaagaggtgatccgcgagcatccg
atcatgctgaaccgcgcaccgacgctgcaccgcctgggtattcaggcgtttgagccggtg
ctgatcgaaggcaaggcaattcagcttcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgtaccctgatgctggcctcgaacaacgtgttgttcccggctaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacgcgcgacaagatcaacggc
aagggcgaaggcctgtcgttcatcgacgtgtccgaagtgctgcgtgcgtacgacaacaag
gaagtcgaactggcttcgcgcgtgaacgtgcgtattacggagtacctggtcgacgcggaa
acgggcgagaagacgccgaagatcacgctgtacccgacgaccgtcggccgcgcgatcctg
tcggaaattctgccgccgggcctgccgttctcggtgctgaacaagtcgctcaagaagaag
gaaatctcgaagctgatcaacacggcgttccgtcgttgcggtctgcgcgagacggtgatc
ttcgtcgacaagctgatgcagtcgggcttcaagctcgcaacgcgcgccggtatctcgatc
tgcgtcgacgacatgctcgtgccgacgaagaaggaagagctgatcggcgaagcgtcgaag
aaggtcaaggaatacgaccgtcagtacatgtcgggtctggtcacgtcgcaagagcgttac
aacaacgtcgtggacatttggggtgctaccggtgacgccgtgggtaaggcgatgatggag
cagctctcgaaggaaaagaccacggatcgcgatggcaacgtcgtggatcaggagtcgttc
aactcgatttacatgatggccgactccggtgctcgcggttcgagcgcccagattcgccag
ctcgccggtatgcgtggcctgatggccaagccggacggctcgattatcgagacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacccacggtgca
cgtaagggtctggccgatacggcactgaagacggcaaactcgggttacctgacgcgtcgt
ctggtcgacgtgacgcaggatctggtcgtggtcgaagacgattgcggcacgagcaacggc
gtggcgatgaaggcgctggtcgagggcggtgaagtggtcgaagccctgcgtgaccgtatc
ctgggtcgcgtggctgtggctgacgtcgtgaatccggaaacgcaagagacggtgtacgaa
gccggtacgctgctcgacgaagacatcgtcgagaacatcgaagcgctgggtatcgacgaa
gtgcgcgtgcgcacgccgctgacctgcgatacgcgtttcggtctgtgcgcactgtgctac
ggccgtgacctgggtcgcggtacgcgtgtgaacgtcggcgaagctgtcggcgtgatcgca
gcacagtcgatcggcgaaccgggcacgcagctgacgatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggcagtggcctcgtcgatcgaagccaagtcgaacggtacggttcgc
ttcacggcaaccatgcgttacgtgacgaacggccgcggcgagcagatcgcgatctcgcgt
tcgggtgaagtcctgatcacggacgatcacggtcgtgagcgcgagcgtcacaaggtgccg
tacggcgcgacgctgctgcaactggatggcgcacaggtcaaggccggtgcccaactgggt
acgtgggatccgctgacgcgcccgatcattaccgaacacggcggtttcgccaagttcgag
aacgtcgaggaaggtgtcacggttgccaagcagatcgacgatgtgacgggtctgtccacg
ctggtcgtgatcgatccgaagcgtcgtggtccggcgtcgaagaacgtgcgtccgcaggtc
aagctgctcgacgagaacggcgtggaagtgaagatcccgggtacggatcacccggtgacg
atcggcttccaggtcggcgcactgatcaccatcaaggatggtcagcaagtgccggtgggt
gaagtgctcgcacgtatcccgaccgaagcgcaaaagactcgcgacattaccgggggtctg
ccgcgcgtggccgaactgttcgaagcgcgtgcaccgaaggacgccggcattctggccgaa
gtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcagcgtctggtcattacc
gatctggacggcaaccagcacgaattcctgattccgaaggaaaagcaggtgctggtgcac
gacggtcaggtggtgaacaagggcgaaatgatcgtggacggcccggccgacccgcacgac
atcctgcgtctgcagggtatcgaagcgttgtcgcgctacatcgtcgatgaagtgcaggac
gtgtaccgcttgcagggtgtgaagattaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttcatcatcggcgaacag
gtcgagcgttcggacatgctctacgagaacgacgccatgaatgccgcggacaagcgtccg
gcgcagtacgagaacgtgctgctgggtattacgaaggcgtcgctgtcgacggactcgttc
atctcggctgcatcgttccaggaaacgacgcgcgtgctgaccgaagccgccatcatgggc
aagaaggacgacctgcgtggcctgaaggaaaacgtcatcgttggccgtctgatcccggca
ggtaccggtctggcgtatcacaaggcccgcaaggcccgcgaatcgtcggatcgcgagcgt
cacgaccagatcgctctggaagaggcatttgccccgatccccacttcggtggaagagccg
acggcagagtaa
DBGET
integrated database retrieval system
