Paracoccus contaminans: B0A89_05090
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Entry
B0A89_05090 CDS
T04876
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcon
Paracoccus contaminans
Pathway
pcon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B0A89_05090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcon03400
]
B0A89_05090
Enzymes [BR:
pcon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0A89_05090
DNA repair and recombination proteins [BR:
pcon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B0A89_05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARJ69093
UniProt:
A0A1W6CW28
LinkDB
All DBs
Position
complement(1067382..1070531)
Genome browser
AA seq
1049 aa
AA seq
DB search
MTTSPAAHAERPGEAEIATALAALLAEGDVIHVAPAEGAAIAVYRALQIACPAASCVLVP
EADALPGSGIRATPANVGLRAAGLAGLAERGEAGPVALITTAEALAQGWPAPQAAPRMLD
VQVGEQTPLESLRDTLVAMGYRDDDRVDEPGEVALHGRVLDVFPTQAANPVRIDAEDGRI
AAIRRFDLLDQRTLNMIDMARIAPAEDSPREGPAVSLLDHLPGARLVMDDLADTRRRNML
ALARDIGGTVAAGVLADEAWEAALAGHERVALPPAGKAPDRFVEGRRPLDAFAQAARAAF
DAGEKVALVGGERDLRFIARRAGQALGCAATPAQDWAQIVAADPGTLWTLPMPAGRGFHR
DGVLVVAAADLLGSRAQRGDAAVAGLNGLLDVAMIRIGDVVVHTEHGIGVVEGIEPLPSA
DGTDGGDAIRLTYHDGGVRLVPVLQADRIWRYGGEPESVTLDKLDGSSWLKRRGEVEAAV
AQTAAALTELAAEQAQIEAPVLDPEPAAYERFAAGFPYAETPDQSRAIEAVRDDLASGRP
MDRLVIGDVGFGKTEVALRAAALAVLAGKQVAVAVPTTVLARQHLDSFTRRFAPLGVAVG
GLTRLDSAAEKKRVKAGLADGSIRIVIGTATVAGKGIAYDDLGLLVIDEEQRFGTADKRK
MRALGAKHVLTMTATPIPRTLQQALVGLQQLSVIATPPARRQPIATRVAPYDTGALRTAL
LREKARQGQSFVVVPRIGDMEAIAATLARLVPELTVLRVHGEMQAAEIDDAMIGFANGDG
DVLLATNIIEAGLDVPRANTMIVTRADRFGLAQLHQLRGRVGRGAQRGQMLMFTDPGAQI
PERTLRRLQTLETLSHLGAGFEISARDLDLRGAGDLLGAEQAGHMKMIGIDLYQQLLSDA
IRAQRGEPPAGRQPDLQLGSEGRLPEDWIADADTRLGVYMRLSRLNEADEIDLIVDELED
RFGPLPEPAERLMATVRIRLEARAAGVERVAAGPAGISIYPREGLVLDTQGLEPREGGVF
VLPEAIDDPAARFARAGALMRGLAERAEA
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatcccctgccgcgcacgccgaacgtcccggtgaagccgaaattgccaccgcg
cttgcggcgctgctggccgagggtgacgtgatccatgtggcgccggccgagggcgcggcg
atcgcggtttaccgggcgctgcagatcgcatgcccggccgcctcatgcgtgctggtcccc
gaggcggatgcgctgccgggatcaggcatccgggccacccctgccaatgtcgggctgcgc
gcagccggccttgcagggctggccgaacgcggcgaggcagggccggtcgcgctgatcacc
accgccgaggcgctggcgcagggctggcccgcgccgcaggccgccccgcggatgctggac
gtgcaggtgggcgagcaaactccgcttgaatcgctgcgcgatacgcttgtggcgatgggc
tacagggatgatgaccgcgtggacgagccgggcgaggttgccctgcacggccgggtgctg
gatgtctttccgacccaggccgcaaatccggtccgcatcgacgccgaggatggccggatc
gcggcgatccggcgttttgacctgctggatcagcgcaccctgaacatgatcgacatggcg
cggatcgcccccgccgaggacagcccgcgcgaggggccggcggtgtcgctgctcgatcat
ttgccgggtgcgcgcctggtgatggatgatctggccgatacccggcgccggaacatgctg
gcactggcgcgcgatatcggcggcacggtcgctgccggcgtgcttgcggacgaggcgtgg
gaggcggcgcttgccgggcatgagcgggttgccctgccccctgccggcaaggcgccggat
cgtttcgtagaagggcgccgtccgctggacgcattcgcccaggcggcgcgggccgctttt
gatgcgggcgaaaaggtggcgctggtcgggggcgaacgcgacctgcgctttatcgcgcgc
cgtgccgggcaggcgctgggctgcgccgccacccccgcgcaggactgggcgcagatcgtc
gcggccgatccggggacgctgtggacgctgcccatgccggcagggcgcggctttcaccgg
gacggcgttctggtggtggcggcggccgatctgctgggcagccgcgcgcagcggggcgac
gcggccgtggcgggcctgaacggcctgctggatgtggccatgatccgcatcggcgatgtg
gtggttcataccgaacacggcatcggcgtcgtcgaggggatcgagccgctgccctcggca
gacgggacggatgggggcgatgcaatccgcctgacctatcacgatggcggggtgcggctg
gttcccgtcctgcaggccgatcgcatctggcgctatggcggagagccggaatccgtgacc
ctcgacaagctggacgggtcaagctggctcaagcgccggggcgaggtcgaggccgcggtc
gcgcagaccgctgccgccctgaccgaactggccgccgagcaggcgcagatcgaggccccg
gtactcgaccccgaaccggctgcctatgaacgctttgcggccggctttccctatgccgaa
acccctgaccagtcgcgcgcgatcgaggcggtgcgagacgatcttgcctcgggccggccg
atggaccggctggtgatcggcgatgtgggctttggcaagaccgaggtcgcgctgcgcgcc
gcggcgctggcggtgctggccggcaagcaggtcgccgttgcggtgcccacgaccgtgctg
gcccgccagcacctggacagcttcacccgccgctttgcgccgctgggggttgcggtgggt
ggcctgacgcgccttgacagcgcggccgagaagaagcgcgtgaaggctggcctcgccgat
ggcagcatccgcatcgtgattggcaccgcgacggtggcgggcaaggggatcgcctatgac
gatctgggcctgctggtcatcgacgaggagcagcgattcggcaccgccgacaagcgcaag
atgcgcgcgctgggggcgaaacatgttctgacgatgacggcaacgccgatcccgcgcacc
ctgcaacaggcgcttgtcgggcttcagcaactgtcggtgatcgcaaccccgcccgcgcgg
cgccaacccatcgccacgcgcgtcgccccctatgacactggggcgctgcgcacggccctg
ctgcgggaaaaggcgcggcaggggcaaagcttcgtcgtcgtcccccgcatcggcgacatg
gaggccatcgccgcaacgctggcccggctggtccccgaactgacggttcttcgggtccat
ggcgaaatgcaggccgccgaaatcgacgacgcgatgatcggttttgccaatggggacggg
gatgttctgctggcgaccaacatcatcgaggcggggctggacgtgccgcgcgccaacacc
atgatcgtgacccgcgccgaccgcttcggcttggcgcagctgcaccagctgcgcgggcgg
gtcgggcggggcgcgcagcgcggccagatgctgatgttcaccgatccgggcgcgcagata
ccagagcgcacattgcgccgcctgcagacgctggaaacgctcagccatcttggcgcgggc
ttcgagatcagcgcccgcgatctggatctgcggggggccggcgatctgctgggggccgag
caggccgggcacatgaagatgatcggcatcgacctttaccagcagcttttgtcggatgcg
atccgcgcacagcggggtgagcccccggccggtcgccagcccgacctgcaactcggcagc
gaagggcgcctgcccgaggactggatcgcggatgccgatacgcggctgggcgtctatatg
cgcctgtcgcgactgaacgaggcggatgagatagacctgattgtcgatgagcttgaagac
cgcttcggccccttgcccgagccggccgagcggctgatggcgaccgtccgcatccggctt
gaagcccgtgccgccggggtcgagcgggtggcggccgggccggccggcatttcgatctat
ccgcgtgaaggccttgtcctggatacccaggggctcgagccgcgcgaggggggtgttttc
gtcctgcccgaggcgatcgacgatcctgcggcgcgctttgcgcgcgctggcgcgctgatg
cggggccttgccgaacgcgccgaggcctga
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