Puma concolor (puma): 112850460
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Entry
112850460 CDS
T08890
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pcoo
Puma concolor (puma)
Pathway
pcoo03008
Ribosome biogenesis in eukaryotes
pcoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112850460 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
112850460 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoo03019
]
112850460 (XRN1)
03009 Ribosome biogenesis [BR:
pcoo03009
]
112850460 (XRN1)
03016 Transfer RNA biogenesis [BR:
pcoo03016
]
112850460 (XRN1)
03036 Chromosome and associated proteins [BR:
pcoo03036
]
112850460 (XRN1)
Messenger RNA biogenesis [BR:
pcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112850460 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
112850460 (XRN1)
Ribosome biogenesis [BR:
pcoo03009
]
Eukaryotic type
Pre-60S particles
RNases
112850460 (XRN1)
Transfer RNA biogenesis [BR:
pcoo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
112850460 (XRN1)
Chromosome and associated proteins [BR:
pcoo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112850460 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
112850460
NCBI-ProteinID:
XP_025769896
UniProt:
A0A6P6H3E5
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINENGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQEGSSICWAALDKNGEEVVTSKDNLEDE
TEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSW
YYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDS
PIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECL
MCWYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRVDQKALYFCGF
PTLKHIKHKFFLKKNGVQVFQQSSRGENMMLEILLSAESDELSIENIASSVLGKSVFVNW
PHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISE
YYLRRKGIIINETSAVVYVQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAF
DSRFSSIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDA
LIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKF
NKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGE
NENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVT
VKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVL
FEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAMNHYS
SNSSISSGHLGGLNHSPQSLFVPTQVPSKDDDEFCNIWQSLQGSGKVQHFQPTLQEKIAV
LPQEISRVTQHHKAAFTDNTVKCQQRKHEPHKKFKEECKSPKTESRSQKMSNKQPNPGIE
NFLASLNISKENEVQSSHHEEPPSEELLSPQSFAMKGTRMLKEILKIDASDTVDHKNEMK
QFGNEATVSSNRRDEYGPSSQPQQNKKLTSYMNKPHSTSEYHNVQPMDHVCWPAPSHIPP
VSTPVTELSRICSLIGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAA
LFALQQLGSLGVNFPFPPPIFPNYPPAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPS
SSHLFGSMPWGPPVPVPGKPFHHASYSGTIPMAGGMPSGVHNQFIPLQVTKKRVANKKNF
ESKEAQSAPATPLQTSQPTSSNVTKVIPQETSSASLKSSQITQPASSFQVEGASQGHSMS
HHKSTPSSSSRRKSRKLAVNFGVPKPSE
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggacatgaatggaattata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagacgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcatcattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaagatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaataaagaaggcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataaatcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagaacataaa
atcatggaatttatcagatctgagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaagacacaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttatctttaatgagagagtatattgactat
gagttttcagtactgaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatcccccatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttggtggttatattaatgaaaatggccatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcgggtgtcgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaggctcctccatatgttgg
gctgctttagacaaaaatggagaagaagtggtaacttctaaagataatttagaagatgag
actgaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatg
acgaagatgggagttgatgtagtatctgatgacttcctggctgatcaagctgcttgttat
gttcaggcaatacagtggattttgcactattactatcatggagttcagtcctggagctgg
tattatccctaccattatgcaccttttctatctgatatccgcaacatcagcacactcaaa
atccattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttcca
gcagctagcaaaaatttacttcctacgtgctaccagcacttgatgaccagtgaagactca
ccaattatagaatattatccgcctgattttaaaactgacctaaatgggaaacaacaggaa
tgggaagctgtggtcctaatcccttttattgatgagaagcgattgttggaagccatggaa
acgtgtaatcactccctcaaaaaggaagagaggaaaagaaaccaacatagtgagtgccta
atgtgctggtatgatagagacacagagttcacctacccctcaccatggccagaaaagttc
cctgccatagaacgttgttgcacaaggtataaaataatatcattagatgcttggcgtgta
gacataagcaagaacaaaataaccagggttgaccagaaggcattatatttctgtggattt
cctactctgaaacacatcaaacacaaattttttttgaagaaaaatggggttcaagtattc
caacaaagtagtcgtggagaaaacatgatgttagaaatcttactgagtgcagaatcagat
gaacttagtatagaaaatatagcttcttcagtgcttggaaaatctgtctttgttaattgg
cctcatcttgaagaagctagagttgttggtgtatcagacggagaaactaaattttacttg
gaagaacctccaggaacacagaagctttatttaggaagaactgccccaccatctaaagtg
gtccatcttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaa
tactacctaagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgttcag
ttactcacaggtcgtaaataccaaataaatcaaaatggtgaagttcgtcttgagaaacag
tggtcaaaacaagttcttccttttgtttatcaaactattgtcaaggacatccgagctttt
gactcccgtttctccagtatcaaaacattggatgacttgtttcctcttagaagtatggtc
tttatgctgggaaccccctattatggctgcactggagaagttcaggattcgggagatgtg
attacagaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgct
ttaatacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagt
cgtcttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaaga
ggatctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattc
aacaaaaaaaatgaggaggtacctggatacactaagaaagttggaagtgaatggatgtat
tcatctgcagcagaacagcttcttgcagagtacttagagagagctccagaactatttagt
tatatagccaaaaacagccaagaggatgtgttctatgaagatgatatttggcctggagaa
aatgagaatggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtc
agtactctgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaa
attgaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgaca
gtgaagccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcga
gatgcagaatttcgtctttttgaccgtgtggtaaatgtgagagagaacttttcagttcca
gttggccttcggggcaccatcataggaattaaaggggctaacagagaagctgatgtacta
tttgaagtattatttgatgaagaatttcccggaggcttaacaataaggtgctcacctggt
agaggttatcgactgccaacaagtgccttggtgaatctttctcatgggagtcgctctgaa
actggaaatcagaagttgacagccattgtgaaaccacaaccagctatgaatcactatagc
tcaaattcatcaatttcctctgggcatttgggaggcctgaaccattccccgcaatcactt
tttgttcctactcaagtacctagtaaagatgatgatgaattttgcaacatttggcagtcc
ttacagggatctggaaaggttcagcactttcagccaactctacaagagaagattgcagtt
ctacctcaagaaataagtcgagtaactcaacatcataaagccgcctttactgacaacact
gttaaatgtcagcaaagaaaacatgagcctcacaaaaaatttaaagaagagtgtaagagt
cctaaaactgagagccggtcacaaaaaatgtcaaataagcagcctaaccctggaattgag
aactttttagcatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaa
gagcctccaagtgaagaacttttgtcaccacagtcatttgctatgaaaggaactcggatg
cttaaagaaatactaaaaattgatgcctctgatactgtggaccataagaacgaaatgaag
cagtttggtaatgaagccactgtttcctctaatagaagagatgaatatggaccttcctca
cagcctcaacaaaataagaaattaacatcttacatgaataagcctcacagtactagcgaa
taccataatgttcagcctatggaccatgtgtgttggcctgctcccagccatatccctcct
gtgtccacaccagtaactgaactttctcgaatttgttcccttattggaatgccacaacca
gatttctcctttcttagaacaccacagacgatgacagtttgccaggtaaaattatctaat
ggcttactggtacatgggccacagtgccattctgaaaatgaagccaaggaaaaagctgca
ctttttgcgttacaacagttgggctccttaggagtgaatttcccttttcctccaccaata
tttccaaattatcctcctgctgtaccacccggaaccattcctccagtttttcctcaacct
actggctgggatcactatggaagcaacttagcactgggggcagctaatataatgccttca
tcatctcacctctttggctcaatgccatggggaccaccagtgccagttcctgggaagcct
tttcatcatgcttcatattctgggaccatacccatggctgggggaatgcccagtggtgtg
cacaatcagttcatacctctacaggttactaagaaaagggttgcaaacaaaaagaacttt
gagagtaaggaggcccagagtgctccagctaccccacttcagactagccagccaacatct
tccaatgtcaccaaagtgattccacaggagacttcatcagcttccttaaagtcctctcaa
attactcaacctgcttcttcttttcaagttgaaggcgcctcccaaggccacagtatgtct
caccacaagtcaacaccaagctcttcttcaagaagaaaatcaagaaaactggctgtcaat
tttggtgttcctaaaccttctgaataa
DBGET
integrated database retrieval system
