Puma concolor (puma): 112850771
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Entry
112850771 CDS
T08890
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pcoo
Puma concolor (puma)
Pathway
pcoo03030
DNA replication
pcoo03410
Base excision repair
pcoo03420
Nucleotide excision repair
pcoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112850771 (LIG1)
03410 Base excision repair
112850771 (LIG1)
03420 Nucleotide excision repair
112850771 (LIG1)
03430 Mismatch repair
112850771 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcoo03032
]
112850771 (LIG1)
03400 DNA repair and recombination proteins [BR:
pcoo03400
]
112850771 (LIG1)
Enzymes [BR:
pcoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112850771 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
112850771 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112850771 (LIG1)
DNA replication proteins [BR:
pcoo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112850771 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112850771 (LIG1)
DNA repair and recombination proteins [BR:
pcoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112850771 (LIG1)
NER (nucleotide excision repair)
Other NER factors
112850771 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
112850771 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
112850771
NCBI-ProteinID:
XP_025770086
UniProt:
A0A6P6H3Z7
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKETSSRETEPPPKVALKERNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQGKCPVMVISVLQIKQLTLREGLEESLVWLIANRGSALSTVP
GTLRHPETAPFSCCSIQRKPLDPSGYNPAKNNYHPVDDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIAGLAGSAST
AKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQDFPPAV
VDAGKGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQLKKDYLDGVGDTLDLVVIGAYLGRG
KRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEDHFQSLQVRVPARPADGMGLGVS
TTFPAPAPADGG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaggagggcaaagcgaaaaagccg
gagaaagagacctccagcagagagacagagccacctccaaaggtggcgctgaaggaacgg
aacggagaggtgcctgagaacgattctccagtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggacgaagccctcacgccctccaaaggccagggt
aaatgcccagttatggtcatctctgtcctacagataaagcaactgacgctcagagaaggg
ttagaagagtccctagtgtggctcattgcgaacagaggcagtgctctgagcacagtgcct
ggcactttgcggcacccagagacggcacccttttcctgctgttccatccagagaaaaccc
ctggacccctctggctacaacccggccaagaacaactaccatcccgtcgacgacgcctgc
tggaagccgggccagaaggtcccttacctggctgtggcccggacatttgagaagattgag
gaggtttctgctcggctccggatggtggagacactgagcaacttgctgcgctccgtggtg
gccctgtcccccccagacctgctccccatcctctacctcagcctcaaccgcctcgggccg
ccccagcagggcctggagcttggcgtcggggacggtgtcctcctcaaggcggtggcccag
gccacggggcggcagctggagtccgtcaaggccgaggcggccgagaagggcgacgtgggg
ctggtggccgagaacagccgcagcacccagagactcatgctgcccccgcccgctctcacg
gccgccggggtcttcgccaagttccgagacatcgccgggctcgccggcagcgcttccaca
gccaagaagatggacgtcatcaaaggcctctttgtcgcctgccgtcactcagaagcccga
ttcatcgccagagccctgagcggacggctacgcctcgggctggcagagcagtcagtgctg
gccgccctcgcccaggccgtgagcctcacgccccccggccaagatttccccccggctgtc
gtggacgctgggaagggccggacagcggaggcccggaagacgtggctggaggaacagggc
atgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcatccccgtgctg
ctggagcacggcctggagcacctcccggagcactgcaggctgagcccaggggtccccctg
aaaccgatgctggcacaccccacccgcggtgtcagcgaggtcctgaaacgctttgaggag
gcggctttcacctgcgagtacaaatacgacgggcagagggcacagctgaagaaggactac
ctcgatggcgtgggtgacaccctggacctcgtggtgatcggcgcctacctgggccgtggg
aagcgggccggccgctacgggggtttcctgctggcggcctacgacgaggagagcgaggag
ctccaggccatatgcaagctcggaactggcttcagtgacgaggagctagaggaccatttc
cagagcctccaggttcgagtcccagctcggccggccgacgggatggggcttggggtctcc
accaccttccccgctcctgcccccgctgatgggggatga
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integrated database retrieval system
