Puma concolor (puma): 112853421
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Entry
112853421 CDS
T08890
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcoo
Puma concolor (puma)
Pathway
pcoo03013
Nucleocytoplasmic transport
pcoo03015
mRNA surveillance pathway
pcoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112853421 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
112853421 (DDX39B)
03015 mRNA surveillance pathway
112853421 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoo03019
]
112853421 (DDX39B)
03041 Spliceosome [BR:
pcoo03041
]
112853421 (DDX39B)
Enzymes [BR:
pcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112853421 (DDX39B)
Messenger RNA biogenesis [BR:
pcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112853421 (DDX39B)
Spliceosome [BR:
pcoo03041
]
Complex C
Other components
EJC/TREX
112853421 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112853421 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112853421
NCBI-ProteinID:
XP_025772739
UniProt:
A0A6P6HAJ1
LinkDB
All DBs
Position
Unknown
AA seq
346 aa
AA seq
DB search
MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN
VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML
EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL
QQYYVKLKDNEKNRKLFDLLDVLEFNQVMIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP
QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG
TKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggatgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtgctggcc
acactgcaacagctggagccggttactggacaggtgtctgtgctggtgatgtgtcatact
cgggagttggcttttcagatcagcaaggagtatgagcgcttttctaaatacatgcccaat
gtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtgctgaag
aagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggctcgaaat
aagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataagatgctt
gaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccatgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgcaagttc
atgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcatgggttg
cagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctc
gatgtccttgagttcaatcaggtgatgatctttgtgaagtctgtgcagcgttgcattgcc
ctggcccagcttctagtggagcagaacttcccagccattgccatccaccgagggatgccc
caggaggagaggctttctcgttatcagcagtttaaagattttcaacgacgaattcttgtg
gccaccaacctatttggccgaggcatggacattgaacgggtgaacattgccttcaactat
gacatgcctgaggattctgacacctacctgcatcgggtggcccgagcaggccggtttggc
accaagggcttggccatcacgtttgtgtcagatgaaaacgatgccaagatcctcaatgac
gtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatttcctcc
tacattgaacagacgcggtag
DBGET
integrated database retrieval system