KEGG   Puma concolor (puma): 112853421
Entry
112853421         CDS       T08890                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
pcoo  Puma concolor (puma)
Pathway
pcoo03013  Nucleocytoplasmic transport
pcoo03015  mRNA surveillance pathway
pcoo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcoo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112853421 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    112853421 (DDX39B)
   03015 mRNA surveillance pathway
    112853421 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcoo03019]
    112853421 (DDX39B)
   03041 Spliceosome [BR:pcoo03041]
    112853421 (DDX39B)
Enzymes [BR:pcoo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     112853421 (DDX39B)
Messenger RNA biogenesis [BR:pcoo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112853421 (DDX39B)
Spliceosome [BR:pcoo03041]
 Complex C
  Other components
   EJC/TREX
    112853421 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112853421 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 112853421
NCBI-ProteinID: XP_025772739
UniProt: A0A6P6HAJ1
LinkDB
Position
Unknown
AA seq 346 aa
MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN
VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML
EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL
QQYYVKLKDNEKNRKLFDLLDVLEFNQVMIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP
QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG
TKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq 1041 nt   +upstreamnt  +downstreamnt
atggatgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtgctggcc
acactgcaacagctggagccggttactggacaggtgtctgtgctggtgatgtgtcatact
cgggagttggcttttcagatcagcaaggagtatgagcgcttttctaaatacatgcccaat
gtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtgctgaag
aagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggctcgaaat
aagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataagatgctt
gaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccatgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgcaagttc
atgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcatgggttg
cagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctc
gatgtccttgagttcaatcaggtgatgatctttgtgaagtctgtgcagcgttgcattgcc
ctggcccagcttctagtggagcagaacttcccagccattgccatccaccgagggatgccc
caggaggagaggctttctcgttatcagcagtttaaagattttcaacgacgaattcttgtg
gccaccaacctatttggccgaggcatggacattgaacgggtgaacattgccttcaactat
gacatgcctgaggattctgacacctacctgcatcgggtggcccgagcaggccggtttggc
accaagggcttggccatcacgtttgtgtcagatgaaaacgatgccaagatcctcaatgac
gtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatttcctcc
tacattgaacagacgcggtag

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