Puma concolor (puma): 112862030
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Entry
112862030 CDS
T08890
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
pcoo
Puma concolor (puma)
Brite
KEGG Orthology (KO) [BR:
pcoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoo03021
]
112862030 (SCAF8)
03041 Spliceosome [BR:
pcoo03041
]
112862030 (SCAF8)
Transcription machinery [BR:
pcoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112862030 (SCAF8)
Spliceosome [BR:
pcoo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112862030 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
112862030
NCBI-ProteinID:
XP_025781017
UniProt:
A0A6P6HZ30
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MPQPLLPALPPPSSLCAAGSCGPSGGECSGRRLFRRRARGLRTDNMEAVKTFNSEDCAST
PACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC
KPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVL
NLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGL
PDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQLQQQKPQPSILQALDAGLVVQLQ
ALTAQLTAAAAAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEISASQLSHVSES
VNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQH
FLEPEANLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKR
RSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSV
CSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSS
GSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQET
VNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSL
VPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTS
LVQPPLSMTPETVKDVGFGSLVLPGGSVASNLATSALPAGNVFNPPTKQAEPEEKVPHLI
DHQIPSAENTRSVIPNDISSSSAILGGQPPNVTSNSGILGVQRPNVSSNSEIIGVRPSNV
SSSAGIIGPQPPNILNNSGILGLQPPTVSSSSGLLGVLPPNIPNNSGLIGVQPPNVPNTA
GLLGTQPPAGPQNLPPLNLPGQRMPAMPMLDIRPGLIPQTPGPRFPLIQPGIPPQRGIPP
PSVLDSALHPPPRGPFPPGDIFSQPERPFLVPGRQSVDNVTNPEKRIPLGNDNIQQEGDR
DYRFPPMEARESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDIRENLVRP
GIDHLGRRDHFGFNPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGSYRFDPRSG
PWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARV
FDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEKLTSSSEINKEKSDTVA
DIESEPVVESTETEGT
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagccgctgctgccagcgcttcctcctccgtcttcgctgtgcgctgctggttcc
tgcggcccgagcggcggggagtgcagtggccgccgcctcttccgccgccgggctcggggc
ctccgcaccgacaacatggaggctgtgaaaaccttcaatagcgaggattgtgcctctact
cctgcttgtacagactgcttttccagcagcatggacacaagaagcatattgtattccctg
aatgactataaaccacccatttctaaagccaaaatgacccaaattactaaggctgccatc
aaagctattaagttctataaacacgtggtacagagtgttgagaaattcattcagaaatgt
aaaccagaatacaaggtacctggactttatgttattgactctattgtacgacaatctcga
catcagtttggtcaagaaaaggatgtgtttgcacccagatttagtaataacatcattagt
actttccagaatttatatcgttgccctggggatgataagagtaaaatagtgagagtatta
aacttatggcagaaaaataatgtgtttaagagtgagattattcagcctcttctggatatg
gcagcagggattcctcccccggttgtcacacctgttttggccagtactactgctgctatg
agcaacaccccaggaacgcctgtgacacctgttactccagccaatgttgtccagggtctg
cccgatccatgggtatctcagataacaaatacagatacacttgccgctgtagctcagatc
ttacaaagtcctcaaggccaacagcttcagcagttgatacaaactttacaactccagcag
cagaagcctcagccttctatcctgcaggccctggatgctgggctggttgtgcagttgcaa
gctctcacggcccagctgacggcggcagctgcagcggccaacaccctgaaccccttagaa
cagggggtgtctttcaacaagaagttgatggataggtttgattttggggaagattctgag
catagtgaagaacccaaaaaggaaatttcagcttctcaactttctcatgtttcagaatct
gtgaacaattcaatttttcatcagatagcagaacaactacagcagcaaaaccttgaacat
ctcagacagcagctcctggaacagcaacagcctcaaaaggcaacccctcaggatagtcag
gaaggaacatttggatcagaacattcagcatcaccatcacaagggagcagtcaacagcat
ttcctcgaacctgaagcaaatttggatgattctatagatattcagcaacaggacatggat
atagatgaagggcaagatggagtggaagaggagatcttcgaacaagaagcaaaaaaagtg
gctgttcgctcaagatcaagaacacattcacgatctcgttcaagatcgccaaggaaacga
aggtctcggtcgcgatctggttctcgaaagcgtaaacacagaaagcgatcacgctcacgc
tcaagagaaagaaagaggaaatcatcacgttcatactcaagtgaaaggagagcaagagaa
agggagaaagaacgacagaagaaggggttacctccaattagatctaaaacattaagtgta
tgtagtactactttatgggttggtcaggtggataagaaggcaacccagcaagatttaacc
aatctgtttgaagagtttggacaaattgaatccattaatatgattcctcccaggggctgt
gcgtatgtctgcatggttcaccgacaagatgctttccgggctcttcagaaacttagttct
ggatcatataaaattgggtccaaggtcattaagattgcttgggctttaaacaaaggtgta
aaaacagaatataaacaattttgggatgtcgatcttggagttacatacataccatgggaa
aaagttaaagtggatgacttggaaggttttgcagaaggaggcatgattgaccaggaaact
gtaaatactgagtgggaaactgtgaaaagctcagaacctgttaaagagacggtccagaca
actcagagcccaactccagttgaaaaggagacagtggtcacaacccaggcagaggttttt
cctccacctgttgctatgttacagattccagtggcgccagctgtgcctacagttagttta
gttccaccagcatttccggtctccatgccggttcctcctcctggattcagtccaatccct
ccacctccttttctgcgagcgagttttaacccttcacaaccacctcctggtttcatgcca
cctccagttccaccacctgttgtaccgccacctgctattccaccagtagtaccaacatct
ttagtgcagccgccattatccatgactccagaaaccgtgaaagatgttggatttggtagt
cttgttttaccgggtggttctgttgccagcaatcttgctacttctgctctgccagctgga
aatgtttttaatcctccaactaaacaagcagagcctgaagaaaaagtacctcatcttata
gaccaccagattccttctgctgaaaacaccagatcagtgattccaaatgatatttccagt
agctctgcaattttaggaggacagccaccaaatgtgacaagcaattctggaattttggga
gtccaaagaccaaatgtgtcgagtaattctgaaattattggagtccggccatctaatgtt
tccagtagtgctgggattattggaccccagccaccaaatattctaaataactctggaatt
ttgggactacagccaccaactgtgtcaagtagttctggacttttgggagtgctaccccca
aatattcctaataattcgggactaataggagtacagccaccaaatgttccaaacactgct
ggacttttgggaacacagccaccagccgggcctcaaaacttaccccctttaaatctccct
ggtcaaaggatgcctgcaatgccaatgttagacattcgtccgggactaataccacagaca
cctggaccaagattccctttaatacagcctggaatcccaccccagcggggaatccctccc
ccgtcggtacttgattcagctcttcatccaccaccccgtggtccgtttcctccaggagat
atttttagtcagccagaaagaccttttctggttcctggaagacaaagtgtagacaatgtt
actaatccagagaaaaggataccactcgggaatgataacattcaacaggaaggagataga
gattaccggtttcctcccatggaagccagggaaagcattagtagacctcccccggtggat
gttagggatgtggttggacggcctatagatccaagagaaggtcctggaaggcctccgtta
gatggtagggatcattttggaagacctcctgtcgatattagagagaatcttgtgaggcca
ggcatagatcatcttggtcgaagagaccactttggctttaatccagagaagccctggggg
cacagagattttgatgagagagaacatcgggttctgcctgtctatggtggtccaaaaggc
ttacatgaagaaagaggtcgatttcggtctggaagttatcgatttgatcctagaagtggt
ccttggaacagaggatttggacaagaagttcacagagattttgatgaccgcagaagaccc
tgggagaggcaaagggatagggatgacagagattttgatttctgcagagaaattaatgga
aaccgtcttggacgagatagaattcaaaacacctgggtcccccctcctcatgctcgggtt
tttgatttttttgaaggggccacttctcaacgaaaaggtgataacgtgcctcaggttaac
ggtgaaaatactgagagacatgcccaaccaccgcctttaccagtacagaatgatcctgaa
ctttatgaaaaactgacatcttcaagtgaaataaacaaggagaagagtgacacagttgct
gatatagaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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