Phocaeicola coprophilus: I6J50_01505
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Entry
I6J50_01505 CDS
T07209
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J50_01505 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcop03019
]
I6J50_01505 (rny)
Messenger RNA biogenesis [BR:
pcop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6J50_01505 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
DsrD
ARA70
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
QRO25000
LinkDB
All DBs
Position
complement(360521..362056)
Genome browser
AA seq
511 aa
AA seq
DB search
MLTTVILAVVAFLVGGALSYGFFKYGLKSKYESIIKKAETEAEVIKKNKLLEVKEKFLNK
KADLEKEVAIRNQKIQQAENKLKQREMVLNQKNEELQRKRNETEAIKENLDAQMVIIEKK
KEELDNLQSQEREKLETISGLSAEEAKERLIDSLKEEAKTQAQSYINDIMDDAKLTANRE
AKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIVVDDT
PEAIVLSAFDPVRREIARLALHQLVTDGRIHPARIEEVVAKVRKQVEDEIIETGKRTTID
LGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLHD
IGKVPDEEPELPHALLGMKLAEKYKEKADICNAIGAHHDEIEMTSLLAPIVQVCDAISGA
RPGARREIVEAYIKRLNDLEQLAMSYPGVTKTYAIQAGRELRVIVGADKIDDKQTENLST
EIAKKIQDEMTYPGQVKITVIRETRAVSFAK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgttgacaacagtaatactagcggttgttgcctttctcgtgggaggggcactttcatat
ggattcttcaagtatggcttgaagtcgaaatatgaatccattatcaaaaaggccgaaaca
gaagccgaagttatcaaaaagaacaagctcctggaagtgaaggaaaagtttctgaacaaa
aaggccgatctggaaaaagaagttgctatccgtaatcagaaaatccaacaggctgaaaac
aaactgaagcagcgcgaaatggtactcaaccagaagaacgaggaactgcagcgcaaacgg
aacgaaacagaagccatcaaggaaaatctggatgcacagatggtcatcatcgagaagaaa
aaagaagaattggacaatctccagtcacaggaacgcgagaaactggaaactatctccggg
ctctcagcagaagaagcaaaggaaagactgatcgactctctgaaagaagaagccaagacc
caggctcagtcatatatcaacgacatcatggatgacgccaagctgacagctaaccgtgaa
gccaagcgcatcgttatccagtctatccagcgggtagctaccgaaactgccatcgaaaac
tcagtgacagtattccatatcgaatcagacgaaatcaaaggacgtatcatcggacgtgaa
ggaagaaacatccgtgctctggaagctgctaccggtgtagaaatcgtggtagacgatact
ccggaagcaatcgttctttctgcattcgaccccgtacgccgtgaaattgcacgtctggcc
ctgcaccagctggtaaccgacggtcgtattcatccggcacgtattgaagaagttgtagcc
aaagtacgcaaacaggtagaagatgaaatcattgaaaccggtaaacgtacaaccatcgac
ctgggtatccatggcctgcatccggaactgatccgaatcatcggtaagatgaaataccgt
tcttcatacggacagaacctgttgcagcatgcacgtgaaacagccaatctttgtgctgtc
atggcatccgaactgggcctgaacccgaagaaagccaaacgtgccggtctgctgcacgat
ataggtaaagtgcctgatgaagaaccggaactgccgcacgcattgttgggaatgaagctg
gctgaaaagtataaggaaaaagcagatatctgcaatgctatcggtgcccaccacgatgaa
atcgaaatgaccagcctgctggctccgatcgtacaggtatgtgatgccatctctggtgca
cgtccgggagcacgccgtgaaatcgtggaagcttacatcaagcgtctgaatgatctcgaa
cagctggcaatgtcttatccgggtgtaaccaagacttatgcaatccaggcaggacgtgaa
ttacgcgttattgtaggagctgacaagattgacgataaacagacagaaaacctgtcaaca
gaaatcgccaagaagattcaggatgaaatgacttatccgggacaggtcaagatcacggtt
atccgcgaaacccgtgccgtaagcttcgccaagtaa
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