Phocaeicola coprophilus: I6J50_01765
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Entry
I6J50_01765 CDS
T07209
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6J50_01765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcop03400
]
I6J50_01765 (mfd)
Enzymes [BR:
pcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J50_01765 (mfd)
DNA repair and recombination proteins [BR:
pcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6J50_01765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
QRO25045
LinkDB
All DBs
Position
414378..417740
Genome browser
AA seq
1120 aa
AA seq
DB search
MNIAELQQIYGKHPNAEGLASLMNNPEIRTIFLEGVHASCTSLFASGVVKSADRVHLFIL
NDLEEAGYFYHDLVQVDGDEHILFFPSSYRRAIKYGQKDAANEILRTEVLSRLEKDEPLV
VVTYPEALAEKVVSRNELTDRTMKLQVGQHVETEEILSTLTEYGFEHVDYVYEPGQFAMR
GSILDVYSFASEYPYRIDFFGDEIDSIRTFEVETQLSKEKKDSVSIVPELAASDKSEICF
LDFLPSASVLWVKDLLWVRERIQTVREEALSPQVLAAYEGEQTELASLEGRLIDGAEFTV
KALEFVRIDFGHKATGTPQAVLKFNTSVQPIFHKNFDMVAGSLTDYSQRGYRLYICSDSM
KQTDRLRDIFQERGDQISFEPVDRTLHEGFVDHTLKCCIFTDHQIFDRFHKYNLRSDKAR
SGKVALSLKELNMFEPGDYVVHIDHGIGKFAGLVRIPNGNTTQEVIKLIYQNDDVVFVSI
HSLHKISKYKGKEGEQPRISKLGTGAWEKIKERTKTKIKDIARDLIKLYSQRKQEKGFKY
SPDSFLQHELEASFLYEDTPDQLKATQDVKADMESDRPMDRLVCGDVGFGKTEVAVRAAF
KAVADNKQVAVLVPTTVLAYQHYQTFSKRLEGMPCKVDYLSRARTAKDTSRILKELANGD
INILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQIKVNVDTLTMTATPIPRTL
QFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEIITEAINFEMSRNGQVFFVNNRIQNLP
ELKAMIERNIPDCRVCIGHGQMQPEELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTI
IINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGI
HIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILNEAVTELKNEEFADLYAEEIKAGE
EKISGEEFVDECTVESDLELLFPNEYIPSSSERMLLYRELDKLELDKDVEDFKARLVDRF
GKIPLEGEELIRIVPLRRLAKRLGVEKVILKAGKMILFFVSNLESPYYQSAAFGKIIDYM
AKYPRDCNLREQNGKRSMVVKNITNVDEAVRILQEIVSLG
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagctgaacttcaacagatttatggcaagcatccgaatgcggaggggctggct
tctttgatgaacaatccggagatccgtaccatttttcttgaaggcgtacatgcttcgtgc
acttcgctgtttgcttccggtgtcgtaaaatcggcagaccgggtacacctatttatatta
aatgatctggaagaggcgggatatttctatcacgacctggtacaggtggacggtgacgag
catatcctgtttttcccttcgtcctatcgtcgggccatcaagtatggtcagaaagatgcg
gcgaatgaaattctgcgtacggaggtgttgagccgtctggaaaaagacgagccgctggtg
gtggtgacttatccggaggcattggctgaaaaggtcgtgtcacgcaatgaactgaccgac
cggacaatgaaactgcaggtaggtcagcacgtggagacggaagaaattctttccactctg
acggaatatggttttgagcatgtggattacgtgtacgaaccggggcagtttgccatgcgt
ggaagtattcttgatgtttattcgtttgcttcggaatatccttatcgtatcgatttcttc
ggagatgagattgacagtatccgaacctttgaggtagagactcagctttcgaaggaaaag
aaagattcggtgagtatagttccggaactggctgcgtccgacaaaagtgaaatctgtttt
ctggatttcctgccgtctgcctctgtgctttgggtaaaagacttgctctgggtgcgcgaa
cgcattcagactgttcgtgaggaagcgctttctcctcaggtactcgcggcatatgaagga
gagcagactgaactggcttcgcttgaaggccgtctgatcgatggagcggagtttactgtc
aaggcactggaattcgtccgtattgatttcggacataaggcaaccggaactccgcaggct
gttttgaaattcaatacttcggtgcagcctatcttccataagaattttgatatggtcgcc
ggttcactgactgattacagtcagcggggatatcgtctttatatctgctcggatagtatg
aaacaaaccgatcgtctgcgtgatatttttcaggaacggggcgatcagatttcgtttgaa
cctgttgaccgtaccttgcatgaaggattcgttgaccatactctgaagtgttgcatcttt
accgatcatcagatatttgaccgctttcataagtataatcttcggagcgacaaggctcgc
agcgggaaagtagctctttcactcaaggagctgaacatgtttgagccgggagattatgtg
gtacatattgatcatggtatcggtaaatttgccgggctggtacggattcccaatggaaat
acgacgcaggaagtcatcaaactgatctatcagaacgatgacgttgtgtttgtttccatt
cactctttgcataaaatttccaaatataaaggaaaggaaggtgaacagcctcgtatcagc
aaactcggtacgggtgcgtgggaaaagatcaaagagcggaccaagaccaaaatcaaggac
attgcgcgtgatttgataaaactttattcgcagcgcaaacaggaaaaaggttttaaatat
agtcccgacagttttttgcagcatgaactggaagccagcttcctttatgaagatactcca
gatcagttaaaggcaactcaagacgtgaaggcagacatggaaagtgatcgtccgatggat
cgtctggtttgtggtgatgtgggcttcggcaagaccgaagttgctgtgcgggctgccttc
aaggctgtggcggacaacaaacaggtggccgtactcgttccgacgactgtactggcctat
cagcactatcagaccttcagcaagcgtctggaaggcatgccctgtaaggtggattacctg
agtcgtgcccgtacggcaaaagatacaagccgtatcctgaaagagctggcgaacggagat
atcaatatactgatcggtacgcacaagatcattggaaaaagtgtgaaattcaaggatctc
ggcttgctgattattgatgaagagcaaaagttcggggtgagcgtgaaggaaaagctccgt
cagatcaaggtaaatgtcgatacgttgaccatgacagcaacaccgatccctcgtacactt
cagttctctttgatgggagcccgtgacctttcggttattcagacgccgcctcccaaccgt
tatccgattcagaccgaagtgcatactttcaatgaagaaatcataaccgaggccattaac
tttgaaatgagccgcaacggacaggtattctttgtaaacaaccgcattcagaatcttccg
gaactgaaggcaatgatcgaacggaatattccagactgtcgcgtgtgtattggtcatgga
cagatgcaacctgaggaactggagaagatcatttttgattttgtcaattatgattatgat
gtattgctcgctacaaccatcattgaaagcggaattgatatacccaatgccaatacgatt
atcatcaatcaggcccagaattttggtttgagtgacttgcatcagatgcgtggacgtgtg
ggacgcagcaacaaaaaagctttctgttatctgctggcacctcctttgtcatcgcttact
cccgaagccaaacgcaggttgcaggccattgaaaactttagtgatctgggaagcggtatc
catattgccatgcaggatcttgatatccgtggagcaggaaatatgctgggtgccgagcaa
agcggatttattgctgacctgggatatgaaacgtatcagaagattctgaatgaggccgta
accgagttgaagaatgaagaatttgccgacttgtatgcagaagaaatcaaggcaggagag
gagaagatatccggagaagagtttgtggacgaatgtactgtggaaagtgatctggaactt
ttgttcccgaatgaatatattcccagcagcagcgaacgtatgcttctctatcgggaactg
gacaaactggaactggataaggatgtggaagacttcaaggctcgtctggttgaccgtttc
ggcaagattcctcttgaaggtgaggaactgatccggattgttccgttacgcaggctggcc
aagcggcttggagtggaaaaggtgattctgaaagcaggtaaaatgattctgttctttgtc
agcaatcttgaaagtccttattatcaaagtgctgcttttgggaagatcattgattatatg
gctaaatatccgcgtgactgcaatttgcgcgaacagaacggcaaacgcagtatggtggtg
aagaacatcacgaatgtggatgaggcagtcagaatcttacaggagattgtttctctggga
taa
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