Phocaeicola coprophilus: I6J50_06955
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Entry
I6J50_06955 CDS
T07209
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I6J50_06955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcop03400
]
I6J50_06955
Enzymes [BR:
pcop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I6J50_06955
DNA repair and recombination proteins [BR:
pcop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I6J50_06955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
DEAD
PIF1
MeaB
AAA_28
nSTAND3
NPHP3_N
HHH
CbiA
TsaE
UvrD-helicase
NTPase_1
HHH_2
TrwB_AAD_bind
Ribosomal_S13
AAA_22
HHH_3
AAA
UvrD_C
T2SSE
DUF5610
SLFN-g3_helicase
Fer4_NifH
AAA_31
ResIII
AAA_16
SRP54
Motif
Other DBs
NCBI-ProteinID:
QRO25956
LinkDB
All DBs
Position
1587623..1589884
Genome browser
AA seq
753 aa
AA seq
DB search
MLKLRCVVERITYQNPENGYSVMRVKVKGYDDLVTLVGNLLEVPAGSVLLCEGDWKVDKR
YGSQFVCQSWEEVMPATAYGIEKYLGSGLVKGIGPKFAQLIVRQFGLETIDVIETDIERL
YEVPGIGKKRVEKIRESWEKQKDIKNVMLFLQGYGVSTAYAAKIYRQYGKESIDKVKENP
YRLADDIWGIGFKTADGIAAKMGYEKNDLRRCKSGIIYTLNQLANEGHVYAEEEQLVKAA
LELLEADEAPIREALNHMVQTEDLKLEDEAIYLPPFYFAEVGTTNRLLALLRESEQDIFA
KEIDVQALSKETGVEYDEVQLQAIEEAIRSKVMVLTGGPGTGKTTTTQGIIAALKHMGLR
ILLAAPTGRAAKRMSEATGMEAKTIHRLLEFNPKDGYKRNDENPLEGDALIVDECSMIDI
ILMNNLMKAIPSSMRVVFVGDIDQLPSVGAGNVLRDIIESERIPVIRLTRIFRQAQTSRI
VMSAHAINQGRFPDTSNGQQTDFFFIQQEEPEKVADDIVNLVKNRLPKAYSQKVSNIQVL
TPMQRGVVGAANLNMALQNALNPSQIALNRGGYSFRQGDRVMQLRNNYDKDVFNGDLGYV
ESVDMEERTLLVNFEDRLVEYEASELDELTLAYATTIHKSQGSEYPIVVMPVLMTHYVML
QRNLIYTGITRAKKICVLIGTKKALSFAIRNMSVLKRNTKLKERLNPELAKPTEKKSVEK
KLDKIYPMSEPVLEAAAEPSESYGKKQPTIETK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaacttcgctgcgtagtagaacgaatcacgtaccagaatcccgagaacgggtat
tcggtgatgagggtcaaggtcaaaggatatgacgacctggtgacgctggtgggcaacttg
ctggaggtgcccgccggcagtgtgctgttgtgtgagggcgactggaaggtggacaagcgc
tacggcagccagtttgtttgccagtcgtgggaggaggtgatgccggctaccgcctacggc
atcgagaagtacctgggtagcggactggtgaagggcatcggtccgaagtttgcccagctc
atcgttcggcagttcggtctggaaaccatcgatgtgattgaaaccgacatcgaacggctc
tacgaggtgccgggtatcggcaagaagcgggtggagaagattcgcgagagttgggagaag
cagaaggacatcaagaatgtgatgcttttcctgcaggggtatggggtgagtacggcctat
gcggccaagatttaccgtcagtacggcaaggaaagcattgacaaggtgaaggagaaccct
taccgactagctgacgacatctggggtatcggcttcaagacggcggacggcattgctgcg
aagatgggctacgagaagaacgacctgcgccgttgtaagagtggtatcatctataccttg
aatcaactggccaacgaagggcatgtctatgctgaagaagaacagttggtaaaagctgct
ttggaattgctggaagcggacgaagcacccatccgggaggcgttgaatcatatggtgcag
acagaagacctgaaactggaggatgaagccatctatctgccaccgttctacttcgccgaa
gtgggcaccacgaaccgcttgctggcattgctccgtgaatcggaacaggacatctttgct
aaagaaatagacgtgcaggctttgtcgaaggaaacaggcgttgagtatgacgaggtgcag
ctgcaagccattgaggaagccatccgctcgaaggtgatggtactgacgggcggaccgggt
acgggtaagaccactaccacgcagggtatcattgctgccttgaagcacatgggactgcgc
atcctgctggcagctcctacggggcgggcagccaagcgcatgagcgaagccactgggatg
gaggccaagaccattcaccggctgctggagttcaatccgaaggacggctacaagcggaac
gatgagaaccccttggagggggacgcactcatcgtggacgaatgttcgatgattgacatc
atcctgatgaacaacctcatgaaggccatcccctcttccatgcgggtggtgttcgtgggc
gacatcgaccagctgcccagcgtgggtgccggcaatgtattgcgcgatatcattgagagt
gaacggattccggtgatccggctgacccgcattttccgccaggcgcagaccagccgcatc
gtgatgagcgcccatgccatcaaccagggacgtttccccgatacaagcaacggccaacag
acggatttctttttcatccagcaggaggagccggaaaaagtggcggatgacatcgtcaat
ctagtgaagaatagactgccgaaagcttacagccaaaaagtgagcaacatccaggtgctg
acgcccatgcaacggggtgtggtaggtgctgccaacctgaacatggccctgcaaaatgca
ctgaacccttcccaaattgccttgaaccgaggcggctattcgttccgacagggcgaccgg
gtgatgcagctgcgcaacaattacgacaaggatgtgttcaacggggatctcggctatgtg
gaatcggtggacatggaggaacgcacgctgctggtgaactttgaagaccgcctggtggaa
tacgaagcctcggaactggatgagctgaccttggcctatgccacaaccatccacaagtcg
caaggctcggaatatcccatcgtggtgatgccggtgctcatgacccactatgtgatgctg
cagcggaacctgatttacacgggcatcacccgtgccaaaaagatttgcgtactcatcggt
accaaaaaggcgctctcttttgccatccgcaacatgtcggtgctgaaacggaatacgaaa
ctgaaggagcgcctgaatccggaattggcaaaacccacggagaagaagtctgtcgagaag
aagttggataagatttatccgatgagcgaacctgtattggaagcagccgccgaacccagc
gaaagttacggaaagaaacaacctaccattgaaacgaaatag
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