Phocaeicola coprophilus: I6J50_07040
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Entry
I6J50_07040 CDS
T07209
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcop
Phocaeicola coprophilus
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcop03009
]
I6J50_07040 (rlmD)
Enzymes [BR:
pcop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I6J50_07040 (rlmD)
Ribosome biogenesis [BR:
pcop03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I6J50_07040 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
N6_N4_Mtase
Cons_hypoth95
Methyltransf_11
UPF0020
PCMT
PrmA
Motif
Other DBs
NCBI-ProteinID:
QRO25967
LinkDB
All DBs
Position
1609354..1610787
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AA seq
477 aa
AA seq
DB search
MARKKKELPLLEKVTITDVAAEGKALAKVNDLVVFVPYVVPGDVVDLQVKRKKNHYAEAV
AVKIHEKSPMRVEPFCQHYGVCGGCKWQCLAYEDQIKYKQKQVFDNLTRIGKVELPEFRP
ILGSEKTMFYRNKLEYTFSNKRWLTEEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWL
QDDISNRIRNSIRDYAYAHNYPFFDLRTQEGMLRNMMVRTSSTGELMVLLQCKITNDEEL
AKMKELLQYVADSFPEITSLLYVINNKCNDTIGDLDVEVFSGKDHIFEEMEGLRFKVGPK
SFYQTNSEQAYNLYKVAREFAGLEGDELVYDLYTGTGTIANFVSRRARKVIGIEYVPEAI
EDAKVNSQINGITNTLFYAGDMKDILTEDFIREHGRPDVIITDPPRAGMHNDVINVILAA
EPKRIVYVSCNPATQARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVLLEKREEPKH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtggcaagaaagaaaaaagaacttcctttactggaaaaggtaacgataaccgatgtagcc
gcagaaggcaaagccttggctaaagtaaatgacttggtggtgtttgtaccctacgtggta
ccgggagatgtagtagacttgcaggtaaaacgcaagaagaaccattatgcagaagctgtg
gccgtaaaaattcacgagaaatctcccatgcgtgtagaaccattctgccagcactacggc
gtatgcggcggttgcaaatggcagtgcctcgcgtatgaggatcagattaaatacaaacag
aaacaggttttcgacaatctgacacggatcggaaaggtagagcttcctgaatttcgtccg
attttaggttcggaaaaaaccatgttctaccgcaataagctggaatataccttctcgaac
aagcgatggctgaccgaggaagaagtgaaacaggatgtgaaatacgatcagatgaatgcc
gtaggattccatattcccggagctttcgacaaggtgctggcaattgagaagtgctggctt
caggatgatatctccaaccgcatccggaacagtatccgtgactacgcatatgcccacaac
tatccattcttcgacttgcgtactcaggaaggcatgctgcgtaacatgatggtacgtact
tcttctaccggcgaactgatggtattgcttcaatgcaagattaccaatgatgaagaactg
gcaaagatgaaggaacttctgcagtatgtggccgactctttccccgaaattacttcgctg
ctctacgtgatcaacaacaagtgcaatgatacgatcggtgatctcgacgtggaagtattc
agcggaaaagatcacatcttcgaagaaatggaaggcctgcgtttcaaagtgggtccgaag
tctttctaccagaccaattctgaacaggcttataatttatataaggtagcgcgcgaattt
gcaggactggaaggagacgaactggtgtatgacctttataccggtaccggaaccattgcc
aactttgtttcacgccgtgcacgcaaggtcatcggtatcgaatatgtacccgaagccatt
gaagatgcaaaagtgaattctcagatcaacggaatcacgaataccctgttctatgccggt
gatatgaaggatatcctgacagaagactttatccgcgaacacggacgtccggatgtcatc
attaccgatcctccccgggcaggtatgcacaatgatgtcattaatgtaattctggctgcc
gaaccgaaacgtatcgtttacgtaagctgtaacccggcaacccaggcacgcgacctgcaa
ctgctggacggtaaatacaaagtgactgccgtacagcccgttgacatgttccctcatacg
catcatgtggaaaatgtcgtgctgctggagaaaagagaagaaccgaaacattaa
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