Phocaeicola coprophilus: I6J50_08135
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Entry
I6J50_08135 CDS
T07209
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J50_08135 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcop03021
]
I6J50_08135 (rho)
03019 Messenger RNA biogenesis [BR:
pcop03019
]
I6J50_08135 (rho)
Transcription machinery [BR:
pcop03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I6J50_08135 (rho)
Messenger RNA biogenesis [BR:
pcop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I6J50_08135 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
RBR
AAA_25
NACHT
AAA
Mor
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QRO26158
LinkDB
All DBs
Position
1849099..1851075
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AA seq
658 aa
AA seq
DB search
MYNIIQLNDKDLSELQQIAKELGLTKTESLRKEDLVYRILDEQAIVGATKKAASAKSGEE
KKEGQPRKRSRISVKKEGDKVYTATKDKAQKLEANTPALPAPAPLFKDELPQTAPAAPAE
SPAENQAPAAEATEEKPKAKRGRKPGSKNKSTLIKEAQATQAEEETKSIPVPVADDDMEL
PALDLSNNSDFIPIEDLPSEKFELPSELLGKFEATKVEAPAAPAKENKNNKFQNRQQRQN
NRFNNKNQAQNNNNNQPAAATPSNNPSTSQQAAPQQPEKPAEKPYEFDDILKGTGVLEIM
PDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVDGTIRPPKEGEKYFPLVKVSK
INGLDPSLIRDRVPFDHLTPLFPDEKFKLCKGYDDNLSARVVDLFAPIGKGQRALIVAQP
KTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARSVNAEVIASTFDEPAERHV
KIAGIVLEKAKRLVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRF
FGAARNIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNI
VASSTRRDDLLLDKTTLDRMWILRKYLSDMNPIEAMDFVKDRLEKTKDNEEFLMSMNS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtataatatcattcaactaaatgacaaggatttatccgagttgcaacagattgccaaa
gagttgggtctgactaaaaccgaatccctccgcaaagaagacttagtctaccggatcctg
gacgaacaggccattgtcggtgccacaaagaaagcagcctcggctaaatcaggggaagag
aagaaagaaggccagcctcgtaaaagatcacgcatcagcgtaaagaaagaaggcgataag
gtgtacaccgcaaccaaagacaaagcacagaaactggaagcaaacaccccggcattaccc
gctcctgccccattgttcaaagacgaacttccacagacagctcccgctgctcctgcagaa
agtccagcagaaaaccaggctccggcggcagaggccacggaagaaaagcccaaagcaaaa
cgcggcagaaaaccgggaagcaaaaacaaatcaaccctgatcaaagaagcacaagccaca
caagcagaagaagaaaccaaaagcattccggttcccgttgctgacgatgacatggaactt
ccggcactcgacctgagcaacaacagcgattttattcctatcgaagaccttccctctgaa
aaatttgaattgccgtcagaactgctcggtaaatttgaagcaaccaaagtggaagctcct
gcagcgccggccaaggaaaataaaaacaataaattccagaaccgccagcaacgccagaac
aaccggttcaacaacaagaaccaggcgcaaaacaacaataataaccagcctgcagcggca
actccttccaacaacccttccaccagccagcaggccgcaccccagcaaccggaaaaaccg
gcagaaaagccttatgaatttgatgatatattgaaaggtacaggcgttcttgaaatcatg
cctgacggatatggattcctccgttcatccgactacaactacctttcttcaccggatgat
atttacgtttcacagtcacagatcaaactcttcggactgaagaccggtgacgtagtagac
ggaaccatccgcccgcccaaggaaggagaaaaatatttcccgctggtgaaagtatccaaa
atcaacggactcgacccgagcctcatccgcgaccgcgttccgtttgatcacctgactccg
cttttccccgacgaaaagttcaagctctgtaaaggatacgacgacaatctctcggcacgt
gtcgtagacctgttcgctcctatcggtaaaggacaacgtgcgcttatcgtggcacagccc
aaaaccggtaagaccatcctgatgaaggacattgccaacgccattgcagccaaccatccg
gaagtctacatgatcatgctgctcattgacgaacgtccggaagaagtaaccgacatggca
cgcagcgtcaacgcagaagtcatcgcttctaccttcgacgaaccggcagaacgccacgtg
aagatcgccggaatcgtattggaaaaagccaagagactggtagaatgcggacacgatgtt
gtcatcttcctcgactccattacccgtctggcccgtgcatacaacactgtatctccggct
tccggcaaggttctttccggtggtgtggacgccaatgcactgcacaaacccaaacgcttc
ttcggcgctgcccgcaacattgaaggcggaggttcactgaccattatcgctaccgccctg
atcgataccggttcgaagatggacgaagtaatcttcgaagagttcaagggtacaggtaac
atggagctccagctcgaccggaacctgagcaacaagcgtatcttcccggctgtaaacatc
gttgcttccagcacaagacgcgacgacctgctgcttgacaagactacgctcgaccgcatg
tggatcctgagaaagtatctgtcagacatgaacccgatagaagctatggactttgtcaag
gaccggctggaaaagacaaaagacaacgaagaatttctgatgagcatgaactcataa
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