Phocaeicola coprophilus: I6J50_12710
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Entry
I6J50_12710 CDS
T07209
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03030
DNA replication
pcop03430
Mismatch repair
pcop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6J50_12710 (holB)
03430 Mismatch repair
I6J50_12710 (holB)
03440 Homologous recombination
I6J50_12710 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcop03032
]
I6J50_12710 (holB)
03400 DNA repair and recombination proteins [BR:
pcop03400
]
I6J50_12710 (holB)
Enzymes [BR:
pcop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I6J50_12710 (holB)
DNA replication proteins [BR:
pcop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I6J50_12710 (holB)
DNA repair and recombination proteins [BR:
pcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I6J50_12710 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
Mg_chelatase
Rad17
RhsPI
RuvB_N
Motif
Other DBs
NCBI-ProteinID:
QRO23884
LinkDB
All DBs
Position
complement(2979326..2980453)
Genome browser
AA seq
375 aa
AA seq
DB search
MFGFSDIIGQDSVKERLRENVRNGRTPHALLFTGPSGCGKLPMALALARYLCCEHPDEME
ACGTCPSCIQMNRLVHPDVHFVFPIVKKKAGRDSVCDDFLPQWREALMKNAYLTPDEWMR
VLGSDNLQPQIYVRESDEIQRKLSLKSSRGGWKVMIIWLPEKMNAECANKLLKLLEEPPQ
RTLFLLVSEEPDLLLSTIVSRTQRISLPPLEEKPLADWLERKFMLHPEDAADIAHRSEGS
LTKAMENISLGDEQRMYFESFVSLMRLAYKRDIRQLKAWSEQVSSLGRERQKGLLVYCQR
MIRENFMFNFHASDLSYLSPDERQFATRFSPYINEKNVMPVMELLEEAQLHVGQNVNSKM
VFFDVALRMIVLLIR
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
gtgtttggatttagtgatattataggtcaggattcggttaaggagcggttgcgtgagaac
gtgcgcaacggccggactccgcatgccttgttgttcaccggtccttccggatgcggaaaa
ctgcctatggctttggctttggcccgctatctttgttgtgaacatccggatgagatggaa
gcctgcggcacttgtccttcctgcatacagatgaaccggctggtgcatcctgacgtgcat
ttcgtatttcccatcgtgaagaagaaggccggacgtgattccgtgtgcgatgacttcctg
ccgcagtggagggaagccctcatgaagaatgcctatctgacgcctgacgaatggatgcgc
gtgctgggctctgacaatcttcagccgcagatttatgtgcgtgaaagcgatgagattcag
cgcaagctttcgctgaaatccagtcggggaggatggaaggtcatgattatctggcttcct
gaaaaaatgaatgcggagtgtgccaacaagcttttgaaactgttggaagaaccgccgcag
cggacactgttcctgctggtcagcgaggaacccgacctcttgttgtctaccattgtgagc
cgtacacagcgcatatccctgccgccgctggaggaaaaaccattggccgactggctggag
cggaagtttatgcttcacccggaagatgcagccgatatcgctcaccgttcggaaggaagt
ctgaccaaggctatggagaatatcagtcttggcgacgaacaacgcatgtatttcgaaagc
ttcgtatcgctgatgcgtctggcttacaagcgtgatatccggcagttgaaagcctggagc
gaacaggtttcttcgttgggaagggaaagacagaaagggctgctggtctattgccagcgc
atgattcgtgaaaacttcatgtttaatttccatgcttccgacctgagttatttaagccct
gatgaacgtcagtttgcaacccgtttttctccctatatcaatgagaagaacgtgatgcct
gtcatggaattgctggaagaggcccagttgcatgtcgggcagaatgtgaactcaaagatg
gtattctttgatgttgccttgcgtatgatcgtgttgttgatccgctga
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