Phocaeicola coprophilus: I6J50_13055
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Entry
I6J50_13055 CDS
T07209
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J50_13055 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcop03019
]
I6J50_13055 (recQ)
03400 DNA repair and recombination proteins [BR:
pcop03400
]
I6J50_13055 (recQ)
Enzymes [BR:
pcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J50_13055 (recQ)
Messenger RNA biogenesis [BR:
pcop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J50_13055 (recQ)
DNA repair and recombination proteins [BR:
pcop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I6J50_13055 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QRO23939
LinkDB
All DBs
Position
complement(3073776..3075959)
Genome browser
AA seq
727 aa
AA seq
DB search
MTGNINLTEQLKKYFGFDTFKGNQEAIIRNLLEGKDTFVLMPTGGGKSLCYQLPSLLMEG
TAIVISPLIALMKNQVDAMRNFSEEDGVAHFINSSLTKSAIDQVKSDILSGKTKLLYVAP
ESLTKEENVGFLKHVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTAT
ATPKVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRAKTANVDRDIIKFIRQNEEKSGIIY
CLSRKKVEELAEVLQANGIKARPYHAGMDSATRSANQDAFLKEDIDVIVATIAFGMGIDK
PDVRFVIHYDVPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLEKFMQGKPVSEQEI
GKQLLLETAAYAESSVCRRKILLHYFGEEYTEDNCGNCDNCLNPKKQVEAQDSLCAVIET
IIAVKENFKQDYIIDVLLGRETSEVLAHKHEELEVFGSGMGEEERLWNAVIRQALIAGYL
TKDVENYGLLKVTPEGHKFLKKPKSFKIVEDNDFDEEEVEEVPLRSGASCAVDPALFSML
KDLRKKMSKKLDVPPYVIFQDPSLEAMATIYPVTLEELQNIPGVGAGKAKRYGQEFCELI
KKHCEENEIDRPEDLRVRTVANKSKLKVSIIQSIDRKVALDDIAVAKGIDFNELLDEVEA
IVYSGTKLNIDYFLDEIMDEDHLEDIYDYFKESTTDGIEEAMDELGDDYTEEEIRLVRIK
FISEMAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgacgggaaatatcaatttgacggaacaattgaagaagtattttggttttgatacgttc
aagggaaaccaagaagctattatccgtaacctgttggaagggaaagataccttcgttctg
atgccgacaggaggcggaaagtcgttatgctatcagcttccttcgctcttgatggaagga
acggcaattgttatttcccctttgatagcccttatgaaaaatcaggttgacgcaatgcgt
aacttcagtgaagaagacggagtggcgcatttcatcaactcttcattgacgaagtcggcc
attgatcaggttaagtcggatatccttagcggaaagaccaagctgctttatgtggctccg
gaatcgttgacgaaggaagagaatgtgggattcttgaaacatgtgaagatttctttttat
gcggtggacgaggctcattgtatttctgagtgggggcacgatttccgtcctgaatatcgc
cgcatccgtccgatcatcaatgaaatcggaaaggctccggttattgctttgaccgctact
gccactccgaaggtaaagatggatatccagaagaacctgggtatgacggatgctgttgag
tttaaatcttctttcaatcgtcccaatctgtattacgaggtacgtgccaagacggccaat
gtagaccgtgatattatcaagtttatccggcagaatgaagaaaagtcgggtattatttac
tgtctgagccggaagaaagtggaagaactggctgaagtgcttcaggcaaatggtatcaag
gcccgtccttatcatgcggggatggattcagccacacgtagtgccaatcaggacgcattc
ctgaaagaagatattgatgtcattgtggctacgatcgctttcggtatgggtattgataag
ccggatgtacgttttgtaatccattatgatgtgcctaagagcctggaaggctattatcag
gaaacaggacgtgcgggacgtgacggaggagaaggacaatgcattactttctactcgaat
aaagacttgcagaaacttgaaaaattcatgcagggaaagcctgtgtcagaacaggaaatc
ggaaagcagttgttgctggaaacagcagcttatgctgagtcatcagtttgtcgcagaaag
attttgttgcattattttggagaggaatatacagaagataattgtggtaattgtgataac
tgtttaaacccgaaaaaacaagtggaggctcaggattcgttgtgtgcagtgattgaaaca
atcattgctgtgaaagaaaactttaaacaagattatataattgatgtgcttctgggacgc
gagaccagtgaggttttggctcataagcatgaagagttggaggtgttcggttctggaatg
ggagaagaggagcgcttatggaatgctgttatccgtcaggctctgatcgcaggctacttg
accaaagatgttgagaactatggcttgctgaaggtgactcccgaaggacataagttcttg
aagaagcccaaatcctttaagattgtagaggataatgactttgacgaagaagaagttgaa
gaagttccgttgcggagtggcgcttcttgtgcagttgacccggcattgttctctatgctg
aaagacttgcgtaagaaaatgtccaagaagctggatgttccgccctatgttattttccag
gatccgtcattggaggcgatggctactatttatccggtaactctggaagaacttcagaac
attccgggcgtaggagctggaaaagcaaagcgctatggacaggaattctgtgagctgatc
aagaaacattgtgaggaaaatgaaattgatcgtccggaagatcttcgtgtccgtacggta
gccaataagtcaaaactgaaagtttccattattcaaagcattgaccggaaagtggcattg
gatgatattgccgttgccaagggtattgacttcaatgaattgctggatgaagtggaagcg
attgtttattccggaacgaaactgaatattgactatttcctggatgaaatcatggatgaa
gatcatctggaagatatctacgactatttcaaggaatcaactactgatggaatagaagaa
gcaatggatgaactgggagacgattataccgaagaagaaattcgtctggtaaggatcaag
ttcatttctgaaatggctaactga
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