Phocaeicola coprophilus: I6J50_13895
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Entry
I6J50_13895 CDS
T07209
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J50_13895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcop03021
]
I6J50_13895
03400 DNA repair and recombination proteins [BR:
pcop03400
]
I6J50_13895
Enzymes [BR:
pcop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J50_13895
Transcription machinery [BR:
pcop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J50_13895
DNA repair and recombination proteins [BR:
pcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J50_13895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
SAM_EPH
NPL
DUF5998
Motif
Other DBs
NCBI-ProteinID:
QRO24076
LinkDB
All DBs
Position
complement(3251362..3252354)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVLMLEADSKFGKFEFRPLEPGFGITVGNALRRILLSSLEGYAINTIHID
GVEHEFATIPGVKEDVTNIILNLKQVRFKQVVEEFENEKVSITVENSTEFKAGDIGKYLT
GFEVLNPELVICHLDSKTTMQMDITINKGRGYVPADENREYCTDVNVIPIDSIYTPIRNV
KYAVENYRVEQKTDYEKLVLEITTDGSIHPKEALKEAAKILIYHFMLFSDEKITLETSDV
DGNEEFDEEVLHMRQLLKTKLVDMDLSVRALNCLKAADVETLGDLVQFNKTDLLKFRNFG
KKSLTELDDLLESLNLSFGTDISKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattagcatttcaaaaacctgataaagtattaatgttggaagcggattccaaa
ttcggaaaattcgagttccgtccgcttgagcccggtttcggtattaccgtaggtaatgct
ttacgccgtattcttctctcttcactggaaggttatgcaattaacacgattcacatcgat
ggtgtggagcatgagtttgcaacaatacccggtgtaaaggaagatgtcactaacattatc
ttgaacttaaagcaggttcgctttaagcaagtagttgaggaattcgaaaatgaaaaggta
agcattaccgttgagaattcaactgaatttaaggcaggtgatattggtaagtatttgacc
ggatttgaagtgttaaatccagaattagttatttgccatttagattcaaagacaactatg
cagatggatattacgatcaacaaaggtcgtggatatgttccggctgacgaaaaccgtgaa
tattgcaccgatgtgaacgtaattcctatcgattcaatttacactccgattcgcaatgtc
aagtatgctgttgaaaactatcgtgttgaacagaagactgactacgaaaagttggtgctt
gagattacgacggatggttccattcacccgaaggaagcattgaaagaagctgcgaagatc
ctgatttatcacttcatgctcttctctgatgaaaagatcactcttgaaacatcagatgtt
gacggcaatgaagaattcgatgaagaagttctccacatgcgtcaattgctgaagaccaag
ttggttgatatggacttgtcagttcgtgcattgaactgcttgaaggctgctgatgtggaa
acactcggtgatctggttcagttcaacaagaccgatctgcttaagttccgtaacttcggt
aagaaatcgctcactgagcttgatgatttgctcgagagtctgaatctgtcgtttggaaca
gatatttctaagtataaattagataaagaataa
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