Phocaeicola coprophilus: I6J50_16885
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Entry
I6J50_16885 CDS
T07209
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
I6J50_16885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcop03021
]
I6J50_16885
Transcription machinery [BR:
pcop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I6J50_16885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
GerE
Sigma70_r4
HTH_5
HTH_10
HTH_11
HTH_23
PF0610-like_N
HTH_40
HTH_38
HTH_ParB
HTH_29
Motif
Other DBs
NCBI-ProteinID:
QRO24611
LinkDB
All DBs
Position
3933158..3933724
Genome browser
AA seq
188 aa
AA seq
DB search
MENENEILKSLASGDQQVFSWLFRRYYLKVRSFAYGFVKDADEADDLAQTVFIKIWDKHE
IFSCVKNFDAYLYTLTKYTIFNYIKSKDVGAVVHDEFPEILDSDTPYEELLASDLKLLID
MVVDSMSPQRKMVYILSRVRGLSNDEIAVKLGIHKKTVENHLNLALRELKNVISTAIVTY
FLLMNWWK
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaaatgaaatactgaaatctctggcatccggtgatcagcaggtgtttagc
tggttgtttcgccggtattatctgaaagtcaggtcttttgcttatggatttgtgaaagat
gctgatgaggctgatgatttggcacaaactgtatttatcaaaatctgggataagcacgaa
atcttttcgtgtgtcaagaatttcgatgcgtatttatatacattgaccaagtataccata
ttcaattacatcaagtcaaaggatgtgggggcagtagtgcatgatgaatttcctgagatt
ttagattcagatactccttatgaagaattactggcatcagatttgaaactgttgattgat
atggtggttgattcgatgtctccgcaacgtaagatggtttatatattgagtcgtgtacgg
ggactttctaatgatgagatagctgtgaaactgggaatacataagaaaacggttgagaat
catctgaatctggcattgagggaattaaagaatgtaatatcgacagctatagttacttat
tttttgttaatgaattggtggaaatga
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