KEGG   Propithecus coquereli (Coquerel's sifaka): 105808542
Entry
105808542         CDS       T08746                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pcoq  Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcoq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105808542 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcoq03041]
    105808542 (SNRNP40)
Spliceosome [BR:pcoq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    105808542 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    105808542 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_Vps41 Beta-prop_WDR75_2nd Ge1_WD40 Beta-prop_NWD2_C Cytochrom_D1 WD40_like Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 105808542
NCBI-ProteinID: XP_012497661
Ensembl: ENSPCOG00000019627
LinkDB
Position
Unknown
AA seq 390 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTGNFGEESSPSAQSLWTLKRLWDIRKKAAIQTFQNTYQVLAV
TFNDTSDQIISGGIDNDIKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHA
GSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgtaagggcccagagttgccgctggtcccagttaagcggcag
cggcatgagttgctgttgggagcggcggggtcgggcccgggcgcggggcagcagcaggcg
acgccgggagctttgctgcaagcggggcctccaaggtgttcctcccttcaagccccaatc
atgctgctctcaggacatgaaggagaagtatactgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatactgttgtggaatgtctatggtgactgt
gataattatgccacattgaagggacacagtggagcagtgatggaactgcattataacaca
gatggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgggatagtgaa
acaggagagagagttaaaaggctaaagggacatacgtcctttgtgaattcctgttatcca
gctaggaggggcccccagcttgtctgcactggcagtgatgatggtacagttaagctttgg
gacatccggaagaaagcagccattcagacatttcagaacacataccaggtgttagctgtg
accttcaatgatacaagtgatcagattatttctggtggaatagacaacgatatcaaggtc
tgggacctgcgccaaaacaagctgacttacaccatgagaggccatgcagattcagtgact
ggcctgagtttaagttctgaaggctcttatctcttgtccaatgcaatggacaatacaggt
aactttggagaggaaagctcccccagcgcccagtcactgtggaccctaaagagactttgg
gacatccggaagaaagcagccattcagacatttcagaacacataccaggtgttagctgtg
accttcaatgatacaagtgatcagattatttctggtggaatagacaacgatatcaagaat
cttctgagatgttcttggtcacctgatggaagcaaaattgcagctggctcagctgacagg
tttgtgtatgtgtgggataccaccagcaggagaatattgtataagctgcctggccatgct
ggctccatcaatgaagtggctttccaccccgacgagccgatcattctctcagcatccagt
gacaagagactgtacatgggtgagattcagtga

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