Propithecus coquereli (Coquerel's sifaka): 105817909
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Entry
105817909 CDS
T08746
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcoq
Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03013
Nucleocytoplasmic transport
pcoq03015
mRNA surveillance pathway
pcoq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcoq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105817909 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
105817909 (DDX39B)
03015 mRNA surveillance pathway
105817909 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoq03019
]
105817909 (DDX39B)
03041 Spliceosome [BR:
pcoq03041
]
105817909 (DDX39B)
Enzymes [BR:
pcoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105817909 (DDX39B)
Messenger RNA biogenesis [BR:
pcoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105817909 (DDX39B)
Spliceosome [BR:
pcoq03041
]
Complex C
Other components
EJC/TREX
105817909 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105817909 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105817909
NCBI-ProteinID:
XP_012509203
Ensembl:
ENSPCOG00000018656
UniProt:
A0A2K6FJ24
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtagacaatgagctcttggactatgaagacgatgaggtggagaca
gcagctgggggtgatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccatccacagttctggctttcgtgactttctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccggttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagataagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttattttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctttttgac
cttctagatgtccttgagttcaaccaggtggtgatcttcgtgaagtctgtgcagcgatgc
attgccctggcccagctcctggtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcaatttaaagattttcaacgacgaatt
cttgtggctaccaacctatttggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaggattctgacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgagaatgacgccaagatcctc
aatgatgtgcaggatcgctttgaggtcaatattagtgagctgcccgatgagatagacatc
tcctcctacattgaacagacacggtag
DBGET
integrated database retrieval system
