Propithecus coquereli (Coquerel's sifaka): 105819100
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Entry
105819100 CDS
T08746
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcoq
Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105819100 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoq03019
]
105819100 (SKIV2L2)
03041 Spliceosome [BR:
pcoq03041
]
105819100 (SKIV2L2)
03009 Ribosome biogenesis [BR:
pcoq03009
]
105819100 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
pcoq03016
]
105819100 (SKIV2L2)
Enzymes [BR:
pcoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105819100 (SKIV2L2)
Messenger RNA biogenesis [BR:
pcoq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105819100 (SKIV2L2)
Spliceosome [BR:
pcoq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105819100 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
105819100 (SKIV2L2)
Ribosome biogenesis [BR:
pcoq03009
]
Eukaryotic type
Pre-60S particles
Helicases
105819100 (SKIV2L2)
Transfer RNA biogenesis [BR:
pcoq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105819100 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DSHCT
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
105819100
NCBI-ProteinID:
XP_012510720
Ensembl:
ENSPCOG00000018092
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGTKKDKEKGKWKGLPGSADKAGKRFDGKLQSESTNSGKN
KRDADFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRAGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSDLFLFCPGSIIRCMRRLEEL
LRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggggatgagctatttagcgtgtttgaggacgactcgaccactgca
gccggaaccaaaaaagacaaggagaaggggaaatggaagggtcttccagggtctgcagac
aaggccgggaaacgttttgatggcaaattacaatcagaatcaactaatagtggaaaaaat
aagagagatgcagattttgaaggcacggatgaacccatctttgggaagaagcccaggata
gaagagtcaataactgaagacttaagtttggcagacctgatgcccagagtcaaggtacaa
tccgttgaaactgtcgaagggtgtacacatgaggttgcgcttcctgcagatgaagattat
ttaccacttaaacctcgagctggaaaagctgcaaaggaatacccattcattcttgatgct
tttcaaagagaagccattcaatgtgttgataataatcagtctgttttagtatctgcgcat
acatcagcaggaaaaactgtatgtgctgaatatgccattgcattggccttaagggaaaaa
cagcgtgtaatatttaccagcccaattaaggctctgagtaaccaaaaataccgtgaaatg
tatgaagaatttcaagatgttggtttgatgacaggagatgttactattaatcccacagca
tcttgtcttgttatgaccacagagattttgagaagtatgttgtacagaggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaatccattacatgagagattcagaacgt
ggtgtagtatgggaagaaaccatcattttgcttcctgataatgtccactatgtcttcctt
tcggctactattccaaatgcccgtcagtttgctgaatggatttgtcatttacataagcag
ccttgtcatgtaatttacacagattatcggcctactccattgcaacactacatttttcca
gcaggaggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcaatgcaagtgcttcgggatgcaggtgatttggcaaaaggagaccagaag
ggacggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaagcctat
gcacttcaaatgaccaaattagattttaatacagatgaagaaaagaagatggttgaagaa
gtattcagtaatgcaattgactgcttgtctgatgaagataaaaaactccctcaagttgaa
cacgtacttcctcttttgaagcgggggattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggcttaataaaggccttatttgccaca
gagacttttgctatgggaattaacatgccagctagaactgttttatttacaaatgcccgc
aaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatgtctggt
cgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagatgaaaag
atgagcccaacaattggaaaacaattacttaagggctcagctgatcctctaaatagtgct
ttccatttgacctataatatggttttgaacttactgcgtgtagaagaaattaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagttgta
gagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaagaaagt
gtagtcatctattataagattagacagcagcttgccaaactgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctgcaaccaggtcgtttggtaaaggta
aagaatgaaggagatgactttggctggggagtagtggtgaatttctcaaaaaagtcaaat
gttaagcctaattctggtgagctggatccattatatgtagtagaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaacctgatgag
aaaggggagatgcaggttgtcccagttctggtgcatctcctgtctgctatcagcagtgtt
agactttatattcctaaagaccttcggccagtggacaatagacagagtgttttaaaatca
attcaggaagttcagaaacgttttcctgatggtgttcccttattagatcctattgatgat
atgggcattcaagatcaaggactgaaaaaagtcattcagaaagtagaggcttttgagcat
cgaatgtattctcatccacttcacaatgacccaaatttggaaactgtgtatacactttgt
gaaaaaaaggcacagattgcaatagatattaaatctgcaaagcgagaactgaagaaagca
agaacagtcctgcaaatggatgaactcaaatgtcgcaaacgtgttttaagaaggttgggg
tttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagataagcagt
gatttgtttcttttctgtccaggcagcataattcgttgtatgaggcgcctggaagaactg
cttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaattt
gcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctctacttgtaa
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