Propithecus coquereli (Coquerel's sifaka): 105820668
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Entry
105820668 CDS
T08746
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pcoq
Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03008
Ribosome biogenesis in eukaryotes
pcoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoq00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105820668 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
105820668 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoq03021
]
105820668 (XRN2)
03019 Messenger RNA biogenesis [BR:
pcoq03019
]
105820668 (XRN2)
03009 Ribosome biogenesis [BR:
pcoq03009
]
105820668 (XRN2)
03016 Transfer RNA biogenesis [BR:
pcoq03016
]
105820668 (XRN2)
Transcription machinery [BR:
pcoq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105820668 (XRN2)
Messenger RNA biogenesis [BR:
pcoq03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105820668 (XRN2)
Ribosome biogenesis [BR:
pcoq03009
]
Eukaryotic type
Pre-60S particles
RNases
105820668 (XRN2)
Transfer RNA biogenesis [BR:
pcoq03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105820668 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
105820668
NCBI-ProteinID:
XP_012512658
Ensembl:
ENSPCOG00000016468
LinkDB
All DBs
Position
Unknown
AA seq
944 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECSGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGKEYTKAYVVILSDASAPGEGEHKIMDYIRRQRAQPNH
DPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPR
EKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFF
VGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVED
SIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALSSRNSPGSHVASNPRHAA
YEMRMQNNSSPSISPNTSFTSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYY
KNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADM
PSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKK
YAWQGVALLPFVDERRLRAALEEVYPDLTPEETKRNSLGGDVLFVGKHHPLHDFILELYQ
TGSTKPVDVPPELCHGIQGRFSLDEEAILPDRLEYRIERHAPKPITNNLALTDLMWTLGS
LAYIEALALQATKLIRSNYCLLFFSSINFKDPQFAEDYIFKAVMLPGARKPAAVLKPSDW
EKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGIYNTAAPPPATYQGNLY
RPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQPQRFDRGVGAEPLLPWNRMLQTQNAAFQP
NQYQMIAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgctggctcagtcgcaagtacccgtccatcattgtcaac
tgcgtggaagaaaagccaaaggaatgcagtggtgtaaagattccagttgatgccagtaaa
cctaatcccaatgatgtggagtttgataatctatatttggatatgaatggaatcatccat
ccctgtactcatcccgaagacaaaccagcaccaaaaaacgaagatgaaatgatggttgca
atttttgagtatattgacagacttttcagtattgtaagaccgagacgacttctctacatg
gcaatagatggagtggcaccacgtgctaaaatgaaccagcagcgttcgaggcggttcaga
gcatcaaaagaaggaatggaggcagcagtcgagaagcagcgagttagggaagaaatactg
gcaaaaggtaaagagtatacaaaagcatatgtggttattttatctgatgctagtgctcct
ggtgaaggagaacataaaatcatggattacattagaagacaaagagcccagcctaaccat
gacccaaatactcatcattgtttatgtggagcagatgctgatcttattatgcttggcctt
gctacacatgaacccaactttaccattattagagaagaattcaagccaaacaaacccaaa
ccatgtggtctttgtaatcagtttggacacgaggtcaaggattgtgaaggtttgccaaga
gaaaagaagggaaagcatgatgaacttgcagatagtcttccttgtgcagaaggagagttt
atctttcttcgtcttaatgttcttcgtgagtatttggaaagagaactcaccatggccagc
cttccgttcacatttgatgttgagaggagcattgatgactgggtcttcatgtgcttcttt
gtgggaaatgacttccttcctcatttgccatcattagagattagggaaggtgcaattgac
cgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaaagt
ggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgaggat
agcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaaaaa
agaaagagaatgaagagagatcaaccagctttcactcctagtggaatattaacccctcat
gccttgagttcaagaaattcaccaggttctcacgtagccagtaatccgagacacgcagcc
tatgaaatgaggatgcagaataattctagtccttcaatatcacctaatacgagtttcaca
tctgatggttccccatctccaataggaggaattaagcgaaaagcagaagacagtgacagt
gaacctgagccagaggataatgtcaggttatgggaagctggttggaagcagcggtactat
aagaacaaatttgatgttgatgcggctgatgagaaattccgtcgtaaagttgtacagtct
tatgttgaaggactttgctgggttcttcgatattattaccagggctgtgcttcctggaag
tggtattatccattccattatgcaccatttgcttcagactttgaaggtattgcagacatg
ccatctgattttgagaagggtacaaaaccgtttaaaccactagaacaacttatgggagtt
tttccagctgcaagtggtaactttctacctccatcatggcggaagctcatgagtgatccc
gattcaagtataattgacttctatcctgaagattttgctattgatttgaatgggaagaaa
tatgcatggcaaggtgttgctctattaccatttgtggatgagcgaaggctgcgagctgcc
ctagaagaggtatacccagacctcactccagaagagaccaaaagaaacagccttggaggt
gatgtcttatttgtcgggaaacatcacccactccacgacttcattttagagctgtaccaa
acaggttctactaagccagtggatgtaccgcctgaactatgtcatgggattcaaggaagg
ttttctttggatgaagaagccattcttccagatcggctggagtatagaattgaaaggcat
gctcctaagcccatcacaaacaatctggctctgacagatttgatgtggacactggggtct
ctggcttacattgaagcattggcgcttcaggccaccaagctaatacgatcaaattattgt
ttattgttcttttccagtattaattttaaagacccgcagtttgctgaagattacattttt
aaagctgtaatgcttcctggagcaagaaagccagcagcagtactgaaacccagtgactgg
gaaaaatccagcaatggacgacagtggaagccccaacttggctttaaccgggaccggcga
cctgtccacctagatcaggcagccttcaggactttgggccatgtcatgccgagaggctca
ggaaccggtatttacaacactgctgcaccaccacctgcgacttaccagggaaacttatac
aggccactgttaagaggacaagcccagattccaaaacttatgtcaaatatgaggccccag
gattcctggcgaggtcctcctcctcttttccagccacaaagatttgacagaggcgttgga
gctgaacctctgctgccatggaaccggatgctccaaacccaaaatgcagccttccagcca
aaccagtatcagatgatagcaggacctggtgggtatccacccagacgagatgatcgtgga
gggagacagggatatcccagagaaggaaggaaataccctttgccaccaccctcaggaaga
tacagttggaattaa
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integrated database retrieval system
