Poriferisphaera corsica: KS4_05250
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Entry
KS4_05250 CDS
T06996
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcor
Poriferisphaera corsica
Pathway
pcor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KS4_05250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcor03021
]
KS4_05250 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcor03400
]
KS4_05250 (rpoC)
Enzymes [BR:
pcor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KS4_05250 (rpoC)
Transcription machinery [BR:
pcor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KS4_05250 (rpoC)
DNA repair and recombination proteins [BR:
pcor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KS4_05250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
NUC
Motif
Other DBs
NCBI-ProteinID:
QDU32493
UniProt:
A0A517YQJ1
LinkDB
All DBs
Position
638158..642564
Genome browser
AA seq
1468 aa
AA seq
DB search
MADIAYDRVNDYAAVKITLASPNDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIFGPE
RDYECACGKYKGTKFKGIICDRCGVKVTHSRVRRKRMGHINLAAPIVHIWFFKAIPSHLG
NLLGMKTSDIEKVVYFQDYVVTEPGDTPLKHQQVLTEDEYRQAYESYGAGFQAMMGAEAV
KELLSRMDLNAVAGELRADLNNTKSKQKIKDLSKRLKIIEQIRHSENDPGWMVMDVVPVI
PPDLRPLVLLESGNFATSDLNDLYRRIINRNNRLKKLIDLNAPEVIIRNEKRMLQQSVDA
LFDNGRCRRPVLGSSSRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPNLKLHQ
CGLPKKIALELYQPFIIRKLKEHGLVDTIKSAKKMLERRDPEVWDILEEVIHEHPVMLNR
APTLHRMGIQAFEPVLVEGNAIRVHPLVCTGFNADFDGDQMAVHLPLSVEAQAEASLLML
SPHNIFSPANGNPIISPSQDILLGAYYLTMKHGGGEPDREKMMKFHTPHEAFLAYDLKKI
EMHDFIEVRMPEGRWVDVVNDQKDQAVPMPKNLRIVTTVGRLLFNEILAHGMQFYNCALG
SKGCSRVIDDTYAISGRPATIDLLDNMKNIGFKHSTISGLSFGLTDLRIPEKKKELIDKT
QKKVDRVEKAFMAGAITERERYNQLLDLWTHCREAVTKELLKELRKDRRDEFNNHLPVDS
DEGKLYINPVFIMSKDASGARGNVSQVQQLAGMRGLMSKPSGEIIETPIKANAREGLSVL
EYFSSTHGARKGLADTALKTADSGYLTRKLADVAQNVFVTGDDCGTHKGVTKHAIYKGEE
IDVALSQQIVGRTARETIRNPITDQLIAEENEIITEEAARAIEGLGIESVMVRSPLSCDS
SHGICARCYGRDLSTGRKVEEGLAVGIIAAQSIGEPGTQLTMRTFHTGGVATTATIDTSF
QASTPGKIVIRDANAVPTKDEDGNDCLVALKRNGEVLVTDDKGRELEKFKVQYGAMILVN
EGDTVKRGQILVKWDPHRTVILAEKAGAIRFEDIVLGETVREEKAGDVKQLVVIEHKGEM
HPRIVIEDTAGNILDFHYLPAKARIDVTEGESVAAGHLLARQPREASGSADIVGGLPRVT
EIFEARKPKESAIMAEISGTVELRSDRRRGKMTVIVRSEAGLEVDHHVPQDKHMLVHTGD
YIDAGDPLIDGPLIPQDILRVKGEENLFAYLIDEVQNVYRAQGVPIDDKHIEIIVSQMLR
KIRVENPGDTNLLPNEVVDKFRFREANATVAGMGKIKDPGDSNLPLDAIVSKNELKDAVA
ECEAEGKVPPKAAKCRPSTGQTLLLGITKASLQSDSFLSGASFQETTKVLTEAALAGKQD
TLVGLKENVLLGHLIPVGTGFTKYTGMNVIKLAEPPSQEKLSREEELEYAAALAEAAGAI
TPDQIKTTVGESRLVAQMLGEDGKKRMR
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atggctgatatagcttacgatcgtgttaatgactacgccgctgtgaagatcacacttgct
tcaccgaacgatatccgttcatggtccttcggcgaagtcaaaaaaccagaaacgatcaac
taccgtacataccgtcccgaaaaagacggcctgttctgcgaacgtatctttggaccagaa
cgcgactacgaatgtgcctgcggtaaatacaaaggcaccaaattcaaaggtattatctgt
gatcgttgtggcgtcaaagtcacacactcccgcgtacgccgcaagcgtatgggtcacatc
aacctcgccgcgccgatcgtccacatttggttcttcaaagccataccttcccacctcggc
aacctccttggaatgaagaccagcgacatcgaaaaggtcgtttacttccaggactacgtc
gttaccgagcccggcgacaccccactcaaacaccagcaagtcctcaccgaagacgaatac
cgtcaggcttacgagtcctacggtgctggcttccaggccatgatgggtgctgaagcagtc
aaagaactgctctcccgtatggacctcaatgccgtcgcaggtgaactccgcgctgacctt
aacaacactaaatctaaacagaagatcaaagacctttccaagcgtctgaagatcatcgag
cagatccgccactcagaaaacgatccaggttggatggtcatggacgttgttcctgtcatc
cctccagacctgcgtccactcgttcttctcgagtccggcaactttgctacttccgacttg
aacgacctctaccgtcgtatcatcaaccgtaacaaccgtctcaagaaactcatcgacctc
aacgctcctgaagtcatcattcgtaacgaaaaacgtatgcttcagcagtctgtcgatgca
ctctttgataacggtcgttgccgtcgtccagtgctcggctcatccagccgcccactcaag
tcactcaccgacatgatcaagggcaagcaaggccgcttccgtgaaaaccttctcggtaag
cgtgtcgactactccgctcgttccgtcatcgtcgtcggccccaacctgaaacttcaccag
tgtggtcttcccaagaagatcgctctggaactttaccagccattcattatccgcaagctc
aaagagcatggcctcgtcgacaccatcaagtccgcgaagaaaatgctcgagcgtcgtgat
cctgaagtctgggacatcctcgaggaagtcatccacgagcatccggttatgctcaaccgt
gctccgacccttcaccgtatgggtattcaagctttcgaaccagtactcgtcgaaggtaac
gctatccgcgttcacccactcgtctgtaccggcttcaacgctgacttcgacggtgaccag
atggctgtccacctcccactctcagtcgaagctcaagctgaagcttcactgctcatgctc
tcaccgcacaacattttctccccagccaacggcaaccccattatctcaccttcgcaggac
atcctcctcggtgcttactacctcaccatgaaacatggtggcggcgagcccgatcgcgaa
aagatgatgaagttccacaccccgcatgaagccttcctcgcttacgatctcaaaaagatc
gaaatgcacgacttcatcgaagtccgcatgcctgaaggccgctgggttgacgtcgttaac
gaccaaaaagatcaagccgttccgatgccgaaaaaccttcgcatcgtcaccacggttggc
cgtctcctcttcaacgagatcctcgctcatggcatgcagttctataactgtgccctcggc
tccaagggttgctcacgtgtcatcgacgacacctacgcaatctccggtcgtcccgcgacc
atcgatcttctcgacaacatgaagaacatcggcttcaagcactcaacaatctcaggccta
tccttcggcctcaccgacctccgtatcccagagaagaaaaaagagctcatcgacaagacc
cagaaaaaggtcgaccgcgtcgagaaagcattcatggccggtgctatcaccgaacgtgaa
cgttacaaccagctcctcgacctctggacacactgtcgtgaagccgtcaccaaggaactc
ctcaaggaactccgtaaggaccgccgtgacgagttcaacaaccacctccctgtcgactcc
gatgaaggcaagctgtacatcaacccggtgttcatcatgtccaaagacgcgtccggtgct
cgtggtaacgtctcgcaggttcagcagctcgctggtatgcgtggtctgatgtctaagcct
tccggtgaaattattgaaacaccgattaaggctaacgctcgcgaaggtctatccgtcctc
gagtacttctcatcaacccacggtgctcgtaagggcttggccgacaccgcgcttaagacc
gctgactccggctacctcacccgtaaactcgctgacgtcgctcagaacgtcttcgtcacc
ggcgacgactgtggtacccacaagggtgtcaccaagcacgccatctataagggtgaagaa
atcgacgtcgcgctcagccagcaaatcgttggccgtaccgctcgcgaaaccatccgcaac
ccgatcaccgatcaactcattgcggaagaaaacgaaatcatcacagaagaagcagctcgc
gccatcgaaggcctcggcatcgagtccgtcatggttcgctcaccgctctcttgtgattca
tcacacggtatctgtgctcgctgctatggccgcgacctctccaccggccgcaaggtcgag
gaaggcctcgccgtcggcatcatcgcagctcagtccatcggtgagccaggcacgcagcta
accatgcgtaccttccacactggtggtgttgcgacaaccgcaaccatcgacaccagcttc
caggcttccacccctggtaagatcgtcatccgtgacgccaacgctgttccaaccaaggac
gaagacggcaacgattgcctcgtcgctcttaaacgtaacggtgaagtactcgtgaccgac
gacaagggccgcgaacttgagaagttcaaagtccaatacggtgccatgatcctcgtcaac
gaaggtgacaccgtgaaacgcggccagatcctcgttaaatgggatccacaccgtaccgtc
atcctcgccgaaaaagctggtgccattcgcttcgaagacatcgtcctcggcgaaaccgtt
cgcgaagaaaaagcgggtgatgttaaacagctcgtcgtcatcgaacacaagggtgaaatg
cacccacgtatcgttatcgaagacaccgctggcaacatcctcgacttccactacctgcct
gcgaaggctcgtatcgacgttacagaaggtgaaagcgtcgccgctggccacctccttgcc
cgtcagcctcgtgaagcatccggttctgccgacatcgtcggtggtctcccacgtgttacc
gagatcttcgaagctcgtaaaccgaaggaatccgccatcatggccgagatctccggtacc
gtcgaacttcgttctgaccgccgccgtggtaagatgaccgtcatcgtccgttccgaagct
ggcctcgaagtcgatcaccacgtcccgcaggacaagcacatgctcgtccacaccggcgac
tacatcgacgcaggcgatccgctcatcgacggcccactcatcccacaagacatccttcgt
gttaagggtgaagaaaacctcttcgcttacctcatcgacgaagttcagaacgtctaccgt
gcacagggcgtccccatcgacgataagcacatcgagatcatcgtgtctcagatgctccgc
aaaatccgcgttgagaaccccggcgacaccaacctcctgccaaacgaagtggtcgacaag
ttccgcttccgtgaagcaaacgcaaccgtcgctggcatgggcaagatcaaagacccaggc
gattccaatcttccactcgatgcgatcgtgtccaagaacgaactcaaggacgctgttgcc
gaatgcgaagctgaaggtaaggttccaccgaaggctgccaagtgtcgtccttccaccggc
caaaccctcctcctcggtatcaccaaggcctcactccaatccgactcgttcctctctggt
gcttccttccaggaaaccaccaaggttctcaccgaagctgccctcgcaggcaagcaggac
acgctcgttggcctcaaggaaaacgtcctcctcggacacctcatcccagtcggtaccggc
ttcaccaagtacaccggcatgaatgtcattaagcttgctgagccaccatcacaggaaaaa
ctttcccgtgaagaggaactcgaatacgcagccgctctcgcagaagcagccggcgccatc
acacccgatcagatcaagacgactgttggcgaatctcgcctcgtcgctcagatgctcggc
gaagacggcaaaaaacgcatgcgatag
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