Poriferisphaera corsica: KS4_08640
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Entry
KS4_08640 CDS
T06996
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcor
Poriferisphaera corsica
Pathway
pcor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS4_08640 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcor03019
]
KS4_08640 (cshA)
03009 Ribosome biogenesis [BR:
pcor03009
]
KS4_08640 (cshA)
Enzymes [BR:
pcor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KS4_08640 (cshA)
Messenger RNA biogenesis [BR:
pcor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KS4_08640 (cshA)
Ribosome biogenesis [BR:
pcor03009
]
Prokaryotic type
rRNA helicases
KS4_08640 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
3H
Motif
Other DBs
NCBI-ProteinID:
QDU32828
UniProt:
A0A517YRG6
LinkDB
All DBs
Position
1020672..1022024
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AA seq
450 aa
AA seq
DB search
MSEIFDTSNTFEDLGLRNSVLKGIEKMGFQHPTDIQALLIPAVLSGRDVIGQAKTGTGKT
AAFGLPLLHMCEQGVPMQALILTPTRELAAQICSELDQLGEFTPIRSVSIIGGMSMRKQQ
QAIEEGVEIIVGTPGRVMDLYGRKQINFKNMKHVVLDEVDRMLDIGFRDDIRKILSNVRC
EHQTVFVSATIDPEIERLSRSFMKNDAEKLSTVSGSLTVDMVDQKYYTVEGWDKRRLLMH
ILKHEDPETTVVFCKTKATVQKIADYLRGRKFDVREIHGDLRQKKRNSVMNSMREGKVQV
LVASDLAARGLDVEHITHVLNYDLPEDPEIYVHRIGRTARAGRRGFAWSFVTPEQGQLLT
NIEILTGAHIEKLEFDEGFKPGPVPKDVLEEREREEARQKRREQDTVRTGPRSLDGLSDD
QLSAMFPGGKIPTGASKKKSGGRLRSKRRR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagatttttgatacaagtaatacgtttgaagacctaggtttgcgcaattccgtg
ttaaagggaattgagaagatgggttttcagcatccgacggatattcaagcgttattgatc
ccggcggtgctgagcggtcgcgatgtgatcggacaagcgaaaacggggacgggtaagacg
gcggcatttggtttgcctttgcttcacatgtgtgagcagggtgttccgatgcaggcgttg
attttgacgcctacgcgcgagttagctgctcagatatgttcagagttggatcagttgggc
gagtttacgccgatccgatcggtgagcattattggtggcatgtcgatgcgtaagcagcag
caggcaattgaggaaggtgttgagattattgtcggcacgcctggccgcgtgatggatttg
tatggtcgtaagcagatcaactttaagaacatgaagcatgtagtgttggatgaagttgac
cggatgcttgatatcggtttccgcgatgatatccgcaagattttgtcgaacgtgagatgc
gaacatcagacggtgtttgtgtctgcgacgattgatccggaaattgaacggctctcacga
agctttatgaagaatgatgctgagaagctgtcaacagtgtcgggttcactgacggttgat
atggtggatcagaagtattacaccgttgagggttgggataaacgtcggttgttgatgcat
atattgaaacatgaagatcctgagacgacggttgtgttctgtaagacgaaggcaacggtt
cagaagatcgcggattatttgcgtggtcggaagtttgatgtgcgtgagattcacggtgat
ttgcggcagaagaagcgtaatagtgtgatgaactcgatgcgtgaagggaaagttcaggtg
ttggttgcatcagacttggcggcgcgtggattggatgttgagcatattacgcacgtgctg
aattatgatttgcctgaagatcctgagatttatgttcataggattggcagaacggcgcgg
gcagggcggcgcggttttgcgtggtcgtttgtgacgccggaacaggggcagttgctgacg
aatattgagattctgacgggtgcgcatattgagaagcttgagtttgatgaaggcttcaag
ccgggcccggttcctaaggatgtgttagaggagcgggaacgggaggaagcgcgtcagaag
cggcgagaacaggatactgtgcgaacagggccgcgatcgcttgatgggcttagtgacgat
caattgagcgcgatgttcccaggtgggaaaattccgacaggcgcgagtaagaagaaatcg
ggtggccgattgcgatcgaagcgtcgccgctaa
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