Poriferisphaera corsica: KS4_09980
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Entry
KS4_09980 CDS
T06996
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcor
Poriferisphaera corsica
Pathway
pcor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KS4_09980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcor03400
]
KS4_09980 (mfd)
Enzymes [BR:
pcor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KS4_09980 (mfd)
DNA repair and recombination proteins [BR:
pcor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KS4_09980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDU32959
UniProt:
A0A517YRW2
LinkDB
All DBs
Position
complement(1167969..1171391)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSSSTSTWLDQLLESRQFRALIDLTSKANHIVANGSRGSSTNLLAAALAEKTKRPTLLVV
AHLDEADDALDDFDVVKAAGFDLTTERFGALEVLPGESNISIELLGERLHVVSQLVENNT
PDLIVAPIQALMQSVPLPEKLADFTLVLEEGLILDLNALINWLANAGYTRQDAIDQPGDF
SVRGGIIDIYPPAGSIGHTPKGPNQPLGPIRLDYFGDEIERINQIDPETLGSKDHVKIAR
IVGASADQIQANQLTTSLIDLLPEQTIVVMHETVELSEQARGYYERLTSPSGIFSPNATF
GRLNRKTHIEVTQYAARTDTADRVDLPIQQLVPFDNDAKSAIRQLGHLTDSPNNTVHVLC
RKQGEADRLAELTQELIPDHAHLVNISLGSLHRGFVWADSDDLLRDDAHDTTSTKTRRLS
KARKHKLAAQSVDQSLHLIPHHELFHRYETRRRVRKVSADPITTEASDAFLDIDLGDYVV
HIDHGIAQFVGLKSMRRNNLTQEYLTLEFADKALLHVPATQIDLIQKYIGGFHGRPPLSK
LGGKSWAKQKKNVADSVRDLAKQLLQVQAARETMPGIRYPNASAWMSEFEAEFPYDETED
QLAAMHAIKHDMSQDRPMDRLICGDVGFGKTELAIRAAFKAAEYGKQVAVLVPTTVLAEQ
HEITFKQRMADYPFRIESLSRFKTPKQSKRILTDLQLGQVDILIGTHRLLSKDIHFGDLG
LVIIDEEQRFGVEHKNKLLQYRLTADVLTLSATPIPRTLHMSMIGLRDISSLSTAPVDRR
SIVTEVIPFDRNRVKSAIIRELNRDGQIYFVHNRVQSIERMKDELQELVPDARIIIGHGQ
MAPRQLEQIMLAFMRHEYDILVATTIIESGIDIPTANTMFVNHADYFGLAQLHQLRGRVG
RYKHRAYCYLLLPEERTVNETAAKRLKAIEQYSMLGAGFKIAMRDLEIRGAGNLLGSEQS
GHIAAVGYEMYCLLLEHETKRLKNEPIIEPAKTHLELPITGSLPKRYISSDKYRMEAYRQ
ISRASTLEQLEAVTQNLTDAYGPPPQQAQTLIDLTELRIAASTLEIDRLKLEADKDLIFT
THKVKNLENILTSAPGRVSVINPTTIYYRPPQNYLSPAATLLAVLRKLIVRPIRDAKSTT
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttccacctctacatggctcgatcaactcctagagtcgcggcaattccgcgcg
ctcatcgatctcacatccaaagccaaccacatcgtcgccaacggctcacgcggctcatcc
accaacctcctcgcagcagccctcgccgaaaaaactaaacgccctacacttctcgttgtc
gcccacctcgatgaagccgacgatgcactcgacgatttcgatgtcgtcaaagccgctggc
ttcgacctcacaaccgaacgcttcggcgctctcgaagtcctccccggtgaatcgaacatc
tcaattgagctgctcggcgaacgactccacgtcgtctcccaactggtagaaaacaacaca
cctgatttaatcgtcgcgcccattcaagccctcatgcagtccgtcccactgccggaaaaa
ctcgccgacttcacactcgtcctcgaagaaggcctcatcctcgatctcaacgccctcatc
aattggctcgcaaacgccggctacacccgccaagatgccatcgaccaacccggtgacttc
tccgtccgcggtggcatcatcgacatctacccaccagccggatccatcggccacaccccc
aaagggcctaaccaaccattaggccctatacgactcgattactttggcgatgaaatcgaa
cgcataaaccaaatcgaccctgaaacgctaggctcaaaagaccacgtcaaaattgcacgc
atcgtcggcgcttccgcggatcaaattcaagccaatcaactcaccacctcactcatcgat
ctgctacccgaacaaaccatcgttgtcatgcacgaaaccgtcgagctttccgaacaagcc
cgtggttactacgaacgcctcacctccccctccggcatcttctctcccaacgcaacattc
ggccgactcaaccgtaaaacacacatcgaagtcacacaatacgccgcacgcacagatacc
gccgaccgtgtcgacctccctatccaacagttagtccccttcgacaatgacgccaagtcc
gccatccgccagttaggccacctcaccgactcacccaataacactgtccacgtcctctgc
cgcaagcaaggcgaagccgaccgcctcgccgaactcacacaagagctcatccccgaccac
gcacatctcgtcaacatctcactcggctccctccaccgcggcttcgtctgggccgactct
gacgacctccttcgtgacgacgcacacgacacaacctccacaaaaacgcgacgcctctcc
aaagctcgtaaacacaaactagccgcccaatctgtagaccaatcactgcacctcatcccg
caccacgaactcttccaccgctacgaaactcgccgccgcgtccgcaaagtctcagccgac
cccatcaccaccgaagcttctgacgctttcctcgacatcgacctcggcgactatgtcgtc
cacatcgaccacggcatcgcccaattcgtcggcttgaaatccatgcgccgcaacaacctc
acacaagaatacctcacactcgaattcgccgataaagcactcctacacgtccccgcaaca
caaatcgacctcatccaaaaatacatcggcggcttccacggccgccctcccctctcaaaa
ctcggcggcaaatcatgggcaaaacaaaagaaaaacgttgccgactccgtccgtgacctt
gccaaacaactcctccaagtccaagccgcacgcgaaaccatgcccggcatccgctaccca
aacgcctccgcatggatgtccgaattcgaagccgaattcccatacgacgaaaccgaagac
cagctcgccgccatgcacgccatcaagcacgacatgtcgcaagatcgcccaatggatcga
ctcatctgcggcgacgtcggcttcggcaaaacagagctcgctatccgcgccgcattcaaa
gccgcagaatatggcaagcaagtcgctgtactcgtcccaacaacagtccttgccgagcaa
cacgaaatcactttcaaacagcgcatggccgactacccattccgcattgaatcactatca
cgattcaaaacaccaaaacaatcaaagcgaatcctcaccgaccttcaacttggccaagtc
gacatcctcatcggcacgcaccgtctcctctccaaagacatccacttcggcgatctcggc
ctcgtcatcatcgacgaagaacaacgcttcggcgtcgagcacaaaaacaagctcctccaa
taccgactcaccgccgacgtcctcaccctctccgcaacacccatccctcgaacactccac
atgtccatgatcggcctacgcgacatttcctctctctccaccgcccccgtcgaccgccga
tctatcgtcaccgaagtcatccccttcgatcgcaaccgtgtcaaaagcgccatcatccgt
gaactcaaccgtgacggccagatctatttcgtccacaaccgtgttcaatccatcgaacgc
atgaaagacgaactacaagaactcgtccccgatgcacgcatcatcatcggccacggacaa
atggcaccccgacaactcgaacaaatcatgctcgctttcatgcgtcacgaatacgacatc
ctcgtcgccacaaccatcatcgaatctggcatcgacatccccaccgccaacaccatgttc
gtcaaccacgccgactacttcggcctcgcacaactccaccagctccgtggccgcgtcggc
cgatacaaacaccgcgcctactgctacctcctcctccccgaagaacgcaccgtcaacgaa
actgccgcaaaacgactcaaagccatcgaacaatactccatgctcggagcaggcttcaaa
atcgcgatgcgtgacctcgaaatccgtggtgctggcaacttactcggctccgaacaatca
ggccacatcgccgccgtcggctatgaaatgtactgcctcttgctcgaacacgaaaccaag
cgactcaaaaacgaacccatcatcgaacctgcaaaaacacacctcgaactccccatcacc
ggctcgctccccaagcgttacatctcctctgataagtaccgcatggaagcctatcgccag
attagccgcgcctctactctcgaacaactcgaagccgtcacccaaaacctcaccgacgcc
tacggcccccctccccaacaagcccaaacactcatcgacctcaccgaactccgcatcgcc
gcatctactctggagatagaccgactcaaactcgaagccgacaaggatctcatcttcacc
acccacaaagttaaaaacctcgaaaacatcctcacctccgctcccggccgagtctccgtc
atcaaccccacaaccatctactaccgccccccacaaaactacctatcccctgccgccacc
ctcctcgccgtcctccgcaagctcatcgtccgaccaattcgcgacgcaaaatcaactacc
tga
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