Poriferisphaera corsica: KS4_22290
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Entry
KS4_22290 CDS
T06996
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcor
Poriferisphaera corsica
Pathway
pcor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS4_22290 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcor03019
]
KS4_22290 (rne)
03009 Ribosome biogenesis [BR:
pcor03009
]
KS4_22290 (rne)
Enzymes [BR:
pcor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KS4_22290 (rne)
Messenger RNA biogenesis [BR:
pcor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KS4_22290 (rne)
Ribosome biogenesis [BR:
pcor03009
]
Prokaryotic type
rRNA processing factors
KS4_22290 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TerS_N
Motif
Other DBs
NCBI-ProteinID:
QDU34167
UniProt:
A0A517YVC4
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Position
2576596..2579250
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AA seq
884 aa
AA seq
DB search
MLINNVPGEECRIAIAVDGKLDEFYQERSSAESHVGNIYKGRVTNVEASIQAAFIDFGLE
RNGFLHISDLHPKYFPGKDKEEFEQVGSKTPRRDRPPIQKCLKRGQEITVQVLKEGIGTK
GPTLTSYLSIPGRFIVMMPDMQRLGVSRKVEDEDARRSMKKILNDLKPPSGFGFIVRTAG
IGQTKTDLKRDLAYLARLWKSIEKRKKAIKTVGELYAESDLVIRTIRDVFRNDISRILID
DVTAAKRARDFLAVSNPRTKTKVVYYNDLVPIYHRFGIEDQIDQINAREVPLPSGGALVF
DQAEALVAIDVNSGKSRDAQDAESNAFNTNMEAVDEICRQLKLRDLGGLVVNDLIDMRES
RHRRKIESRFRQNLKNDRARSRINPISQFGMLEMTRQRMRPSLKKSIYNECVHCAGTGHV
KTAETVVLEVMRKLAMVMHHRKVAHLELVISPDVAFHLLNRKRAQLVSLERKHGKPVMVR
VGGEQIDFLEIKAYDERKTPLNIENLMSGKQIPKPIDAAYIDLAIDEIPMVQEPEEALEG
NEVEAEISQLVEENAAREAAAEEEEQKKRRRRRRGSRGGKKLHDESEDGEMAKEEQQEEQ
KDSRRRRGTDSRRRRSSDSSRQREGSDEGGNESGEKHERSSSRERSSDRRRSSDRDRERP
SGRERSSSRERTSDRERSSERGRSSDRSRRRGGKDEKREDVKVEPRKAEDVAEQYKAAKS
DEKKSSTRKKTVRKKRATTSKKKSVRTSSVDKPRKVSPEQVGNVLEEAREVKAEVNGNVA
DHLAEEKKPIRKKRYTTRRVSSDDVAGHQAAPKPRTKVRKKRASTSRAETGNQTSNADAG
NEKKVEGRTGSKVVRRKKRSSKSVKKVETKSVTSSGYSNRMLKK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaataatgttcccggcgaagaatgcaggattgcaatcgctgtggacgggaag
ctggacgagttctatcaggaaaggtctagcgccgagtcgcatgtcggtaatatttacaaa
ggacgtgtgacgaatgtagaggcttcgattcaggctgcatttatcgatttcggtctggaa
agaaacgggtttttgcatatctcggatcttcatccgaagtattttccaggaaaagataaa
gaagaatttgaacaggtaggaagtaagacgccacggcgtgatcgtccgcctattcagaag
tgcttgaagcgtggacaagagatcacggtacaggttctgaaggaagggattgggacgaag
ggccctaccctgacgagttatctgtcgatcccgggtcggtttattgtgatgatgcctgac
atgcaaaggttgggcgtgtcacggaaggtggaggatgaagatgcgcgtcgttcgatgaag
aagattttgaatgatcttaagccgccatccggttttggattcattgttcgtacggcgggg
attgggcaaacaaagacagatttgaagcgggaccttgcgtatcttgcgcggctatggaag
tcgatcgagaaacgtaagaaggcgatcaagacggtgggcgaattgtatgcagaatcggac
ttggtcatcaggacgattcgtgatgtgttccgtaatgacattagtcggattttgattgat
gatgtaacggcggcgaagcgtgcaagggacttcttggcggtgtcgaacccgcgaacaaaa
acgaaagttgtttactacaacgatctggtcccgatctaccaccggtttgggattgaagat
cagattgatcagatcaatgcgagagaagtgccgctgccatcgggtggcgcgttggtgttt
gaccaggctgaggcattggttgcgattgatgtgaactcgggcaagagtcgtgatgcacaa
gatgcggaatcgaatgcgtttaatacgaacatggaagctgtggatgagatttgtcgacag
ttgaagttgcgcgaccttggcgggttggtggttaatgacctgattgatatgcgtgaatcg
cggcatcgtcgcaagatcgagtcacggttccgtcagaatttaaagaacgaccgtgcgcgg
tcgcggatcaatccgatcagtcagtttgggatgctggagatgacgcgtcagcggatgcgg
ccgtcgttgaagaagtcgatttacaatgaatgtgttcattgtgcggggacgggtcatgtg
aagacggcggagacggtggtgcttgaggtgatgcgtaagctggcgatggtgatgcatcat
cgtaaggttgcgcatttggagctggtgatcagcccggatgttgcgttccatttgttaaac
cggaagcgtgcgcagttggtgagtttggagcgtaagcatggcaagccggtgatggtgcgc
gtgggcggtgaacagattgatttccttgaaattaaggcttatgacgagcgaaagacgccg
ctgaatattgagaatttgatgagcggcaagcagattccgaagccgattgatgctgcgtat
attgatttggcgattgacgaaattcctatggttcaggaaccggaagaagcgttggaagga
aacgaagttgaggctgagatcagtcagctcgtcgaagaaaatgcggcgcgtgaagcagcg
gcagaggaagaagaacagaagaagcgtcgcagaagacggcgtggaagccgtggtggtaag
aagctgcatgacgaatctgaagatggggagatggctaaagaagagcaacaagaagaacag
aaagattcacgtcgccgccggggtacggatagtcgaaggcgtcgtagttcggatagttca
agacagcgagaaggctcggatgagggcgggaatgaatcaggtgagaagcatgaacgttct
tcgagccgcgaacgatcatcggatcgtcgacggtcatcggatcgtgatcgtgaacgacca
tctgggcgtgagagatcgtcaagccgcgagcggacttcggatcgtgaaagatcttctgaa
cgtgggcgatcatcggatcgcagcaggcgtagaggtggtaaggatgagaagcgtgaagat
gtgaaggttgaaccgcggaaagctgaggatgttgctgaacagtataaagcggcgaaatcg
gatgagaagaaaagtagtacacgcaagaaaaccgtgaggaagaaacgtgcgacgacttcg
aagaagaagtcagtacgaacatcgagcgttgataagccgcgtaaggtttcaccggaacag
gttggcaatgttctggaagaagctcgggaagttaaagctgaagtgaatggcaatgttgcg
gatcatttggctgaagagaagaagccgattcgcaagaaacgttataccacacgtcgtgta
agtagtgacgatgtggcgggccatcaagcagcaccgaaacccaggacgaaagttcgtaag
aagcgtgcttcgacaagccgcgcggaaacgggcaatcagactagcaatgctgatgctggg
aatgaaaagaaggttgaaggacgtacgggaagtaaggttgtgcgtcgcaagaagcgttcg
agtaagagcgtgaagaaagtcgaaacaaaaagcgttacgagcagcggctacagtaacagg
atgctgaagaagtaa
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