Polynucleobacter corsicus: C2747_02280
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Entry
C2747_02280 CDS
T08334
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcos
Polynucleobacter corsicus
Pathway
pcos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2747_02280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcos03019
]
C2747_02280
Enzymes [BR:
pcos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2747_02280
Messenger RNA biogenesis [BR:
pcos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2747_02280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWE19081
LinkDB
All DBs
Position
407357..408775
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AA seq
472 aa
AA seq
DB search
MTNTVPEINSPTGATESGATPATITFADFGLDPKIQKAVSEQGYNTPTPIQAQAIPHVLA
GSDLMGAAQTGTGKTAAFVLPIIQKILRHASSSASPARHPIRALVLTPTRELAVQVAENA
ASYSKHTDLRAAVVYGGVDMKEQVATLRGGVEILIATPGRLLDHIGSKVANLSQVEILVL
DEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNA
AADTVKQVVHMVASADKQQAIVKVLEARTRQGLSRQCIIFTNSRLGCARLARSLERDGIK
AGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPSMPCVINHELPFNAEDFIH
RIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDIQPLPEGSSRPAHSRNSSRSDA
PAKMSDPFFYKPYEPTAVVKPASEAANPAEKKVGITPAKPAVGALLGGFKKK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgttcctgaaataaattcccctaccggcgccactgagagtggcgccacc
ccagcaacaattacctttgctgactttggtttagatccaaagattcaaaaagcggtatct
gagcagggttacaacactccaactccgattcaagcgcaagctattccgcacgtgttggcg
ggaagcgatttgatgggcgcggctcaaaccggtaccggtaaaacggctgcttttgtacta
cccattattcaaaagattctgcgtcacgctagtagcagtgcttcacctgcccgccatccg
atccgtgctttggtattaacgccgacacgtgagttggctgttcaggttgctgagaacgca
gcgagttattcaaagcacaccgatttgcgtgccgccgtggtttacggtggcgtggatatg
aaagagcaagtagccacactgcgtggcggtgtagagattttgattgcgacccccggccgc
ttgctggatcacattggctctaaagtagccaacttgtctcaagtagaaattctggtgctg
gacgaagccgatcgcatgctcgacatgggcttcttacctgacttacagcgcattattgat
ttgattccagctcagcgccaaactttattgttctcagctacgttttcaccagagattaag
aagttggcgcaaagttatttgcgcacgccagtgactgttgaagtggcgcgccaaaatgcc
gcggcagatactgttaagcaagtagttcacatggtggctagtgctgataagcaacaggcg
attgtgaaagtgctggaagcgcgtactcgtcaaggtttatctcgtcagtgcatcatcttt
accaacagccgtttaggctgtgcaaggctagctcgctctttggagcgtgatggtatcaag
gctggcgcgattcacggtgacaagagtcagggtgagcgcactctgactttagatgcattt
aaatctggagcgatcgaggccttagttgcaaccgacgtggctgctcgcggtctggatatt
ccgtcgatgccttgtgtgattaatcacgagttgccatttaatgcggaagattttattcat
cgtattggtcgtacaggtcgcgctggcagtaaaggcgacgcgattgcactagtcgatgct
agtgaaaaacgtttactcgacgatattgaaaagttgatgaagcgcaagttggatattcag
ccattgcctgagggtagctcacgtcccgctcacagtagaaattcatcgagatcagatgcg
ccagcaaaaatgtcagatccttttttctacaagccttacgagcctactgctgtagtcaag
ccagcatcagaggctgcaaatcctgcagagaaaaaagtcggtattactcctgcgaaacca
gcagttggcgctttactgggcggcttcaagaaaaaataa
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