Polynucleobacter corsicus: C2747_05310
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Entry
C2747_05310 CDS
T08334
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcos
Polynucleobacter corsicus
Pathway
pcos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2747_05310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcos03400
]
C2747_05310 (mfd)
Enzymes [BR:
pcos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2747_05310 (mfd)
DNA repair and recombination proteins [BR:
pcos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2747_05310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
CTE_SPB4
ERCC3_RAD25_C
AroM
HemY_N
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QWE19617
LinkDB
All DBs
Position
complement(1020705..1024259)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSDALKLAPPIPAPRAGQRFTFSGLVGSSDAALIAQSALRYRSEFSVMVIFCAQAQEAQR
LLEEIPAFAPQLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCDIVLVPITTA
LQRLGPPNFLSGHTFFFRQGDKLNEVALKLQLQQAGYDPVSSVMRPGEYSIRGGLIDLFP
MGSSLPYRLDLFGDEIEQIRAFDPDTQRSLYPVKEVRLLPGHEFPFDDASRTAFRGRWRE
IFEGDPTRCSIYKDANLGIPSAGIESYLPLFFEESSTVFDYFPRSGDPVWAVSIGNVEES
IKGFWKDTLSRYEFLKHDLDRPILPPAELFLDADQFFTAAKPNARLALNKEADKETKESP
QFLAVPDLSVHRRDTDPINRLRTLVSQEKVRVLICSDSNGRKESIRQLFEESNSASGQHG
KPLYPLKPEGFEGVSDFIKSDALFGLVTAQLFNGFTWPAENLIIVTEAELFTATARQRRK
GKESESADPDMLFKDLSELKIGDPVVHSDHGIGRYQGLVLLNLAPQKEEPIFEEFLHLVY
AKDATLYVPVQQLQMVTRYAGSDPDSAPLHQLGSGQWDKARRKAAQQIRDTAAELLNLYA
ARAIRKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFG
KTEVALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRVVELSRFRTTKEIN
AALEAIGKGEADIIIGTHKLLSKETQFANLGLVIVDEEHRFGVRQKDALKALRAEVDILT
LTATPIPRTLGMAMEGLREFSVIATAPQKRLAIKTFVRREGDGVIREAVLREIKRGGQVY
FLHNEVETIQNRKHELQELIPEARISVAHGQMHERELESVMRDFVTQRTNILLCTTIIET
GIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAI
QAMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKEPD
LLSPLQATTDVNLGVPALFPNDYCPDVHERLSMYKRFAGTNDFSELMGLREELVDRYGDL
PDQAKSLYETHRLRLEMTSFGIKKIDASPLSIQIQFIPNPPIDPMKIIQLIQSSKYIQLN
GQDKLKILPQKEKDFEKLEQRLEHIRKILRSLNSSAMPNTAQAN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcattaaaactagcaccccccatacctgcaccgcgggctgggcagcgcttt
accttttcaggcctagttggctcttcagatgcagcactcatcgcccaatctgcccttcgg
tatcgctcagagttctcagtcatggtgattttctgtgcccaggcacaggaggcccagcgg
cttttggaagaaattccggcttttgcaccacaactcaaaacacgcctactgcctgactgg
gaaatcctgccctatgaccatttctcacctcaccaggatttggtttcagagcgcttagcg
actctgtatgaattgctcaatggcagctgcgacattgttctggtcccaattactacagca
ctccaaagactagggccgccaaactttttatctggtcacaccttcttttttaggcagggt
gacaagctcaatgaagtcgcactgaaactgcagttgcagcaggccggttacgatcccgta
agctcagtaatgcgccccggtgaatacagcattcgtggtggcttgattgatttatttcca
atggggtcgagcctgccttatcgcctagatctttttggtgatgagattgagcaaatcaga
gcttttgatcctgatacccaacgcagcctctatccagtaaaagaagttcgcctattacca
ggtcacgaatttccatttgatgatgcttcacgaaccgcatttcgtggacgctggcgcgaa
atatttgaaggtgatccaacacggtgctcaatttacaaagatgccaacctaggaattcct
agtgcaggtattgaatcctatttacccctcttctttgaggagtcatcgacagtctttgat
tactttccccgttcgggcgatcctgtttgggcggtgagcattggtaatgttgaagaatct
atcaagggcttttggaaagatacgctctctcggtatgaattcttaaagcatgaccttgat
cgccctattctgccgccagctgaattatttctagatgcagatcaattctttacagcagcc
aagccaaatgcgcgcctagcattgaataaagaagcggataaagaaaccaaagaatcacca
caatttttagccgttcccgacctatctgttcatcggcgggatactgaccccatcaatcga
ctgcgaactttagtttctcaagaaaaagtacgtgtactgatttgcagcgatagcaatggt
cgtaaagaatcgattcgtcagctctttgaagagagtaattcagcttctggtcagcatggc
aaaccgctctacccactaaagccagaaggttttgaaggcgtctctgattttattaagagt
gacgctctctttggcctggtaacagcgcaactatttaatggctttacctggcctgctgaa
aacttgattatcgtaaccgaagcagagctgtttacagctactgctcggcaaagacgcaag
ggtaaagaaagtgagagcgccgatccggacatgctctttaaagatttatctgagctcaaa
atcggtgatccggttgtgcactctgatcatgggattggtcgttaccaaggcttagtactt
ctgaatttagcgccacaaaaagaagagccgatttttgaagagtttttgcacttggtctac
gccaaggatgctactctttacgtaccagttcaacaactgcaaatggtgacgcgttatgca
ggctctgatcctgattcggcccctttgcatcagctaggctcgggtcagtgggacaaagca
agacgtaaggccgctcaacaaatacgcgataccgcagctgaacttttaaatctctatgcc
gctagagctattcgtaaaggtcatgcttttgaattctcagcccatgattacgctgcgttt
gcagaaagctttggatttgaagagacacccgatcaagctaatgctattgcggcagttatt
ggggatatgactagcggcacacctatggataggctggtgtgtggtgatgtaggctttggt
aaaacagaggtcgctctacgtgctagttttgttgcggtcatgggtggcaagcaagtggcc
atcttggctccaaccaccctactcgctgaacaacatgtcgcaacctggaaagatcgcttt
gccgattggcctgtgcgcgtcgttgagctctcccgcttcagaactaccaaagaaattaat
gctgccttggaagccattggcaagggcgaagccgacatcattatcggaactcacaaactg
ctttctaaagaaacccagttcgccaatttaggcttagtgattgtggatgaggagcatcgc
tttggtgtacgtcaaaaagatgcgctcaaagcattacgtgctgaagtagatatcttgact
ttaactgccacccctattccacgaacgcttggtatggcgatggaaggtttgcgtgagttt
tcagttattgcaactgcgccacagaagcgcttagccatcaaaacctttgtacgacgagaa
ggtgatggcgtgattcgtgaagcagtccttcgagaaattaaacgtggtggacaggtctac
ttcttgcataacgaagtcgaaaccattcaaaatcgaaaacacgaattacaagagctcatt
ccagaagcgcgcattagcgtagcgcacggtcaaatgcacgaacgtgagctggagtcagtg
atgcgtgattttgtgacccagcgcaccaacatcttgctatgcaccaccattattgaaact
ggtattgacgttccgactgccaataccatcatcatgcatcgcgctgataagtttggcttg
gcacagttacatcaattgcgcggacgtgttggacgatcccaccatcaggcctatgcttat
ttactggtgccagatcccgaggcactcagcaagcaagcgcaactgcgtttaaatgccatt
caagccatggaagagctcgggtctggtttctacttagcgatgcacgatttagagattcgt
ggcgctggtgaagtcctgggggataagcaatctggtgagattcatgaaattgggtttcag
ctctataccgagatgctcaatcgtgcagtcaaatccctgcgtagcggtaaggagccagat
ctcttgtcgccacttcaggcgacaaccgatgttaatttaggtgtaccggccctctttcca
aatgactattgcccggatgtccacgaacgactttccatgtataagcgctttgctggtaca
aacgacttctctgaactcatgggattacgtgaagagctagtagatcgctatggcgattta
cctgaccaggccaaatcactttatgaaacccatcgcttgcgcctagaaatgaccagcttt
ggaattaagaagattgatgcaagcccattatcgatacagattcagttcatccccaatccg
ccaattgacccgatgaagatcattcaactaatccaatcatcaaaatatatacagctcaat
ggccaagataaattgaaaattcttccccaaaaagagaaggattttgagaaactagaacaa
cgtttagagcatattcggaaaattctcagaagtttgaattcatctgccatgccaaatact
gcgcaagccaattaa
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