Polynucleobacter corsicus: C2747_06015
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Entry
C2747_06015 CDS
T08334
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcos
Polynucleobacter corsicus
Brite
KEGG Orthology (KO) [BR:
pcos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcos03019
]
C2747_06015 (hrpA)
Enzymes [BR:
pcos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C2747_06015 (hrpA)
Messenger RNA biogenesis [BR:
pcos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C2747_06015 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
WHD_HA2
AAA_30
AAA_22
NACHT
nSTAND3
T2SSE
nSTAND_NTPase5
AAA_25
AAA_11
AAA_23
SRP54
LAP2alpha
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QWE17879
LinkDB
All DBs
Position
complement(1158709..1162791)
Genome browser
AA seq
1360 aa
AA seq
DB search
MQEPINQQKPKASPETVPASNTLRRLEIQFPEELPVSGQRQIIKDALSSHQVVIVCGETG
SGKTTQLPKICLDLGRGTMNGGRLIGHTQPRRIAATATAKRIAQELGTPIGQDVGYQVRF
ADKTSQGASIKLMTDGILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKR
PDLKLIITSATIDAKRFSDHFALNGKSAPVIEVSGRLFPVEQRYEPLEPDVKPDGKKESK
EAKELSDAVTEAIAKVWREVVSGAGDVLVFLPGEREIRDCAEALRKDHVLQQRFHPEILS
LFARQSVAEQERVFNPGNGRRIILTTNVAETSLTVPNIRYVVDSGLARVKRYSYRNKVEQ
LQIESISQAAANQRAGRCGRVSDGICIRLYSEQDYLSRPKFTDPEILRSSLAAVLLRMSS
LRLPRIQEFPFIDKPLGRAIADGVQLLDELGAIAYDEVTINNDTDSNSRFKLTPIGKQLA
DLPLDPRIGRMLLAAKEHNALREVTIIASALATQDPRDRPMDQAAAADQAHLQFADERSE
FLSFVKLWDWHQDALKHKHSNRQLENLCRSKFLSPRRLREWRDVHGQLHTMLAEKGWKEN
PSAATYEQVHLSLLTGLLGYVAKKEEDEKSQERGSKTGSYIGARGIRPFIWPGSTIGKKA
GAWILAGELQETNRMYARTIAKIEPGWVEKVATHRLIKSLSEPFWDSRQGEVMAFERGTL
YGLPIYHGRRVRYEPHNPKDARSLFITQALVQEEMFGRMDSPALMRETEADARKKYPGTF
EFFWHNRRLIKEIEALEHRSRRPDVLVDDDLLFAFYDSRIPEDVLSREGMKAWLLKTLAS
KDIAEEGADSLLRLAKADLMRHEAAGITVDRYPKKMMVGGSELSLTYHFEPGSPKDGVTL
VVPLTLLNQVDGRRCDWLVPGMCEEKIGLLLKSLPQKLRRHCVPLPEYAKSYLERMLSSK
QFGVGDFLDSLITDIRKERGLEIKRTDFRPESLPLHSSMNFRLVDEHGRQLELERNLSRL
RAEYGETARTAFQAIAQQAVHEELGVLAQVSNAAPISKANQSTNASSVKTVEQGGYRSWD
FGELPETLEIQKGNSVLFGYPALVDRIEACDLEVFDDLLEARKHHWRGLCRLFALSNKDT
LKALQKQLPGIRELGLLFINIGSVDSLIEQILNLALERAFMSDPLPVNAEQFAERLQAGK
PRLALIAQEIAKHALAALQAYADLQKKLSQAKAASANAHADIQNQVQGLISPKFVSDTPY
SQLVHFPRYLKAIAMRIDKLRANPIRDSQCQKDWESVARPWQKLVQAGQGSASHAFGEDQ
ALADFRWQLEELRVALYAQELKTPSPMSLKRLEKVLASFR
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagagcccataaaccaacaaaaacccaaagcgagccctgagactgtgcctgcttcc
aacacccttcgacggctggagattcaatttccagaggagttgccggtatcaggccagcgt
caaatcatcaaggatgctttgagctcccatcaggtcgtcattgtgtgtggagagactgga
tcaggcaaaacaacccaattacccaaaatctgtttagatcttggcaggggcactatgaac
ggtggtcgcctcattggacacacgcaacctcgccgtatcgctgcgacagccactgcaaag
cgcatcgcccaggagttgggcactcccattggtcaagacgtgggctaccaagtgcgcttt
gctgataagaccagtcagggcgcttcaatcaagttgatgaccgatggcatcttgctggca
gaaacgcagcgagaccctcagcttcgtgcctacgacactctcattattgatgaggctcat
gagcgcagcctcaatattgattttctattgggttatctgcgacagttgctacccaagcgc
ccagacctcaagttgattattacttcggcgactattgatgcaaagcgtttttcagatcat
ttcgcattaaatggcaagtctgctccggtaattgaggtgagtgggcgacttttcccggtc
gagcaacgttatgaaccactagagcctgacgttaagcctgacggaaaaaaagagtccaaa
gaggccaaggagctttcggacgcagtcacagaagcaattgcaaaagtatggcgtgaagtt
gtgtctggtgcaggagatgtactggtcttcctgcccggagagcgggagattcgggattgt
gctgaagctctcagaaaagaccatgttctccagcaacgctttcatccggagattttgagt
ctttttgctcggcaatcggttgcggaacaagagcgcgtattcaaccccggcaatggccgc
cgtattattttgacgactaacgttgccgagacctcattaacagttcccaatattcgatat
gtggtcgatagtggcctggcacgtgtcaaacgctactcctaccgtaacaaagtagagcaa
cttcagattgagtcaatttctcaggcggctgctaatcagagggcaggtcgttgtggccgc
gtgtcagatggtatttgcattcgtctctacagcgagcaagattatttaagtcgtcccaaa
tttactgatccagaaatcctgcgtagctcattagcggcggtcttgcttcgcatgagttct
ctacgtttacctcgcattcaagaatttccatttattgataaacctttgggtcgcgcgatt
gctgacggtgtacagctcctagatgagttaggcgctattgcctatgacgaggtcaccatc
aataacgatacggatagcaacagcagattcaagttgacccctattggtaagcagttagcg
gatctgccattagatcctcggattggtcgaatgctgttagcggccaaggagcacaacgca
ttgcgtgaggtcactatcatcgcctccgctttggctacacaagatccacgtgatcgacct
atggatcaagcagctgccgctgaccaagcgcatttgcagtttgcggatgagcgttccgag
tttctaagtttcgttaagctttgggattggcatcaagatgccttgaagcacaagcacagt
aatcgacaattagagaatctctgccgtagtaagtttttgtcaccaagacgtctgcgtgaa
tggcgcgatgttcatggtcaactgcatacgatgttggccgaaaagggctggaaagaaaat
ccatccgccgctacttacgaacaagttcatctttcgctattaactggcctcttgggctat
gtggccaaaaaagaagaggatgaaaaatctcaggagcgtggcagtaagacgggtagttat
attggtgcacgcggtattcgtccctttatatggccgggttcaacgattggcaaaaaagct
ggagcttggattttggctggcgaacttcaagaaaccaatcgcatgtacgctcgcacaatt
gcaaaaatcgagcccgggtgggttgagaaggttgcaacccaccgcctgattaaatccttg
agtgagccattctgggatagtcgtcaaggagaggttatggcctttgagcgcggaacttta
tatggtctgccgatttatcacggtcgtcgcgtacgttatgagccccataacccaaaagat
gcgcgcagtttatttattacccaggcattagttcaagaagagatgtttggccgtatggat
agcccggcattaatgcgggagaccgaagctgatgctagaaaaaagtatcccgggactttt
gaattcttttggcataaccgtagattgattaaagagattgaggcactcgagcatcgttca
cgacgccccgatgtgttggtggatgatgatctcctttttgctttttatgattcacgcatt
cctgaggatgttctgagcagggagggcatgaaagcctggttgctaaagaccttagcgagt
aaagacattgctgaggagggtgctgacagccttttgcgcctggccaaagcagatttaatg
cgccatgaggcagctggaattacggtagatcgctatcctaaaaagatgatggttggtggc
agcgaactaagtttgacttaccactttgaacctggcagccccaaagatggagtaacactg
gtagtgcctttgactctattaaatcaggttgatggtcgtcgatgtgattggctagttcca
ggcatgtgtgaagaaaaaattgggttattacttaaatcacttcctcagaaattgcgtcgc
cactgcgtgccactacccgagtatgcaaaatcctatttagagcggatgttatcaagcaag
cagtttggggtaggtgactttttagatagtctcattaccgatattcgtaaagaacgtggc
ttagaaattaaacggactgatttcagaccagaatctttgcctttacattcttcaatgaat
ttccgcctagttgatgagcacggccgccaattggagttggaacgtaatttatcccgcttg
cgtgctgaatatggagagactgcccgcacagccttccaagccatagcgcagcaagcagtc
catgaagagctcggtgtgcttgctcaggtgagtaacgccgcccctattagtaaagccaat
caaagtactaatgcatcttcagtaaaaacggttgagcagggtggttatcgaagctgggac
tttggtgagctacctgagactctagaaattcagaaaggtaatagcgtcttatttggctat
ccagctttagtcgatcgtatcgaagcatgtgatcttgaagtattcgatgatttgctagaa
gctagaaaacatcattggcggggattgtgcagattattcgcgctatcgaataaagacaca
ctcaaggcgttgcaaaaacaactccctggaattagggagcttggattgctgtttatcaat
attggatctgttgatagcttaattgagcaaattctgaatcttgctttggagcgggcattt
atgagtgatccattgcccgtgaatgccgagcaatttgcagagcgtttacaagcaggtaag
ccccgtttggctctgatcgcgcaggagattgcaaagcatgccttggcggcattgcaggct
tatgcagatctacaaaagaagttatctcaagcaaaggctgcctcagctaatgcccatgca
gatattcagaatcaagtccaaggcctcatatcccctaaatttgtttcagatacgccatac
agccagttagtgcatttccctcgctatctcaaagctattgccatgcgaattgataaatta
cgcgctaatccaatccgggattcacagtgccaaaaagattgggagtcggttgccaggcca
tggcaaaaactcgttcaggctggccaaggctctgcgtcacatgcttttggtgaggatcag
gctttagcggattttcgctggcagctggaggaattgagggtggcgttatatgcccaggag
ctaaagaccccaagcccaatgtccttaaagcgcctagaaaaggtcttggctagctttcga
tag
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integrated database retrieval system
