Plasmodium coatneyi: PCOAH_00036990
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Entry
PCOAH_00036990 CDS
T10133
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcot Plasmodium coatneyi
Pathway
pcot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCOAH_00036990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcot03019
]
PCOAH_00036990
03041 Spliceosome [BR:
pcot03041
]
PCOAH_00036990
03009 Ribosome biogenesis [BR:
pcot03009
]
PCOAH_00036990
03016 Transfer RNA biogenesis [BR:
pcot03016
]
PCOAH_00036990
Enzymes [BR:
pcot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCOAH_00036990
Messenger RNA biogenesis [BR:
pcot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PCOAH_00036990
Spliceosome [BR:
pcot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PCOAH_00036990
Complex C
U4/U6.U5 tri-SnRNP related factors
PCOAH_00036990
Ribosome biogenesis [BR:
pcot03009
]
Eukaryotic type
Pre-60S particles
Helicases
PCOAH_00036990
Transfer RNA biogenesis [BR:
pcot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PCOAH_00036990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
nSTAND3
Motif
Other DBs
NCBI-GeneID:
30910430
NCBI-ProteinID:
XP_019915903
UniProt:
A0A1B1E2C8
LinkDB
All DBs
Position
11:complement(<2473966..>2478059)
Genome browser
AA seq
1307 aa
AA seq
DB search
MSGGNIDDLFNVFEENDIDDNISTKDEAGEGGGGGIPVENHPQGEVNEQTPSNMHTDKGA
LGGGQDDTKGEAQLNTQPQGASAAPMGTPQINVENLISCKKRDQKVQSKIKEEIYNDIQI
ADDTTRNASNKMRKLNEKQNGKNVEKSENGTDHDNEPVEETLIENSKTINNDDVLVLEEF
RSDVNCIHKCIRPKSYIHNKLSENLTPARTYKFELDTFQKKSIECLERNESVLVSAHTSA
GKTVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLSEEFKDVGLITGDISINPDASII
VMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSAT
IPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKNNFIK
AVNAIKEKNNMSEDSHHQSGNSKHNKRAKKNVHDIEKIVQMCHSRNYTPLIIFAFSKKEC
EINATTMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGL
LPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLRKFDGVEKRLITSGEYIQ
MAGRAGRRGLDDRGIVIIMLESPLHWREAEKLFVGEANRLVSQFHLGYNMILNLLRIEGI
TPEFMIERSFIQYQMKKNLFQKIMAKKKVEEKIKEIFNQLTSIYLDKDDQEISKENLLKK
IMDHNYECISRGGEEMNATEMGHTLHDDQNGNAEEGIPPGGVEEEIGIDAEHTVDMMNGE
NFTINDQLKNYNTVFSCISNYYILRNKLIELGETYRSILTARKNITPYLAMGRLLYLVED
DLRWGWAICIEGKVVERAHGGRTAGRNNVTNHANHANHANHPNHTNEANGAVLLVDCLVP
YSQNRKRKLSHSDDDENNDDAEEEDTRKEFAPANDRMKAKWKLITFHIKCIYQISAVVLN
LDKPFDKKNEEQIMSAKMKYNTMVTCLKGEKNIPVINPHQMDIKDEAFLKVVKNINYHEH
MLGRNKLLNNPNLQKFYQLYNMYVALQFEKNLLEANIEKCRFIVLKKELKNMLVLLQGLN
YIEISHNLEGENAQHGTNNQEVNVETDKGDDEANHNGLITGGDFTPSDEKSYVVTMKGQI
ASAILSVDELVISELFFSNFFSKYNYDYICAFLSCFVYDESTNKEVTIEDGVLVEGYEQI
IKTATHVCNKMNECGMNINLKDYLDKFKSAIMPIVLQWVRGYSFMEILTDSQIYEGSIIR
TLRRLDELLRQMICAFRGINNDSMCEILTEATKKLRRGIPFSPSLYL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcggtaatattgatgacttatttaacgtgttcgaggaaaatgacatagacgat
aatatttccacaaaagatgaagcgggcgaaggggggggtggcggaatccccgtggaaaac
catccccagggtgaagtgaacgaacagacacccagtaacatgcatactgacaaaggcgca
ttaggaggtggacaggatgacactaaaggggaagcgcaattgaatacgcaaccgcagggt
gcatcagccgcccctatggggaccccccaaataaacgtggaaaacctcatttcgtgtaaa
aagagggaccaaaaagtgcagagcaaaataaaggaggaaatatacaacgacatacaaatt
gctgatgacacgaccagaaatgcaagcaacaaaatgagaaagttgaacgaaaagcaaaac
ggaaaaaacgtggaaaaaagcgaaaatggaaccgaccatgataacgaaccggtagaagaa
acgctaatcgaaaatagcaaaacgataaacaatgacgatgtgctcgtgttggaggaattc
cgcagtgacgtcaattgcattcacaagtgcatccggccaaagagctacatccacaacaaa
ctcagtgaaaatctcaccccagccaggacctacaaatttgaattagacacttttcagaaa
aaatccattgaatgtttggaacgaaacgaaagtgtcctcgtgtcagcacacacatcagca
ggaaaaacggtcatcgcagagtacgccatcgcgctagggttaagggataagcaaagggtt
atctacaccagccctataaaagcgctaagtaatcaaaagtacagagatctgagtgaagaa
tttaaagacgtcggattgattacgggagatatttccataaatcctgatgcgtctattatc
gtcatgacgacggaaattttgagatccatgttgtatagaggctcttccctaacgaaagaa
gtaaagtgggtaattttcgatgaaatccattacatgcgggatagagatagaggagtcatc
tgggaagaaacgatcatcctactccccctcatggtgcgctttattttcctaagtgcaacc
atcccaaatggtattcaattcgcagaatgggtaagcagtattaaaagccaagcttgccat
attgtctacacagattatcgacccacccccctgcaacattatatctacccaacatccagc
gaaagtgtttttctaatctgcgatgaaaataaagattttaaaaaaaataatttcataaaa
gcggtcaacgcgataaaggaaaaaaacaacatgtcagaggatagtcaccaccaaagtggt
aatagtaagcataacaaacgggcaaaaaaaaacgtccacgatattgaaaaaattgtacag
atgtgccattcgcgtaattatacccctcttatcatttttgcattttccaaaaaggaatgc
gaaataaatgccacgaccatgcataaagtggacttaacagacgacacagagaaggaagtc
ataaaagagttgtacgaaaacgccattcaaattttagctgatgatgatagggctttaccg
caggtccagtttattctccccctcctgttaaggggtataggaatccatcatgggggccta
ctacccatcattaaagaaataatagaaattatgttccaagaatccctgctgaaggtttta
ttcagtacagaaactttctccatgggaattaacatgccagcgaagacggtcgtttttacc
tccttgagaaaatttgatggagtagaaaaacggttaataacatcgggggagtatattcaa
atggctggcagagctggcagacgggggttagacgacagagggattgttattattatgtta
gaaagcccactacactggagagaggcggaaaaattattcgtcggagaagcaaacagacta
gttagtcagttccacttagggtataatatgattttaaatctactcagaatagaaggaatt
acgccagagtttatgatcgagagatccttcattcagtaccaaatgaagaaaaacctcttc
cagaaaattatggccaaaaaaaaagtggaagaaaaaattaaagaaatttttaaccaattg
actagtatctacttggataaggatgaccaggagattagtaaggaaaatctcctgaagaaa
attatggaccataattatgagtgcatctccagggggggtgaagaaatgaatgcaactgaa
atgggccacactctacatgacgaccagaatggcaacgcggaagaaggtatacccccagga
ggagtggaagaagaaataggtatcgacgcggaacacaccgtcgacatgatgaacggtgaa
aacttcaccataaatgatcagctcaaaaactacaacaccgtcttttcctgcatttccaat
tactacatattaaggaacaaactgatcgagttgggcgaaacgtacaggtctatactgaca
gccaggaagaacatcaccccctacttggccatggggagactgctctacctggtggaggac
gacctgaggtggggttgggccatatgcattgagggaaaggttgtggagcgagctcacggg
ggccgcaccgccggtcggaacaacgtcactaaccacgctaaccacgctaaccacgctaac
cacccgaaccacacgaatgaagctaatggcgctgtgctgctcgtggactgcctagtgccg
tacagccaaaacagaaaaaggaaactgtcccacagtgacgacgacgaaaacaatgacgac
gcagaggaagaagacacgcggaaggaattcgcaccggccaacgacaggatgaaggccaag
tggaaactcatcacctttcacataaaatgcatctaccaaatttcggctgtcgtcttaaac
ctagacaaaccctttgacaaaaaaaatgaagaacaaataatgagcgccaaaatgaagtat
aacactatggtaacctgtctgaagggagaaaaaaatattccagttattaacccccaccag
atggatattaaagatgaagccttcctaaaagttgtaaaaaatattaactaccacgaacat
atgttaggtagaaataaattactgaacaatccaaaccttcagaagttttaccagctgtac
aacatgtatgttgctctgcagtttgaaaagaaccttttagaggccaacatagaaaagtgc
agattcatagtcttaaagaaggaactaaaaaatatgctcgttcttctacaaggcttgaat
tatatagaaatttcccacaacttggaaggggaaaacgcgcaacatgggacaaacaatcag
gaagtcaatgtggagacggacaaaggagacgatgaagccaaccataatggactcatcacc
ggaggggacttcaccccgagtgacgaaaaaagctacgtcgtaaccatgaaaggacaaatc
gccagtgccatcctcagtgtggacgaattagtcatttcggagttatttttctccaacttt
tttagtaagtacaactacgactacatatgtgccttcctctcctgctttgtctatgacgaa
tccacgaacaaagaagtaaccattgaagacggagttcttgtggaaggctacgaacagata
attaaaacggccacccacgtttgtaacaaaatgaacgaatgtggaatgaacataaatttg
aaagactacctggacaagttcaagtccgccattatgccaatcgtcttgcagtgggtacgc
ggttactccttcatggaaattctcaccgattcgcagatatacgagggctccatcatacgc
acgctcagacgcctggatgaactgctcagacaaatgatctgcgccttcagaggaatcaac
aacgacagcatgtgcgaaattttgacagaggcgaccaaaaagcttcgacgcggcatcccc
ttctccccctctttgtacctataa
DBGET
integrated database retrieval system
