Prevotella communis: L6468_01845
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Entry
L6468_01845 CDS
T09070
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcou
Prevotella communis
Pathway
pcou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L6468_01845 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcou03021
]
L6468_01845 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcou03400
]
L6468_01845 (rpoB)
Enzymes [BR:
pcou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L6468_01845 (rpoB)
Transcription machinery [BR:
pcou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L6468_01845 (rpoB)
DNA repair and recombination proteins [BR:
pcou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L6468_01845 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UKK62535
LinkDB
All DBs
Position
440359..444171
Genome browser
AA seq
1270 aa
AA seq
DB search
MTSKVIDNRVNFGSVKNPMPLPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPI
TDTRNNFVLEFLDYYIDPPRYTIDECLERGLTYSVPLKAKLKLYCTDPDHEDFGTVIQDV
FLGPIPYMTANGTFVINGAERVVVSQLHRSPGVFFGQSVHANGSLLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFETDKDILQIFDLAEEVKVTKKGLKEVIGCK
LAARVLKSWNEDFVDEDTGEVVSIERNEVIMDRETEITEDNIMDILESGAATILVHKNEA
TAQDFSIIFNTLAKDPSNSEKEAVLYIYRQLRNADPADDASAREVIQNLFFSDKRYDLGD
VGRYRINKKLGLDTEMDVRVLTKEDIIEIIKYLIQLINSKAAVDDIDHLSNRRVRTVGEQ
LSNQFSIGLARMSRTIRERMNVRDNEVFTPMDLINAKTISSVINSFFGTNPLSQFMDQTN
PLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYA
KINELGFIETPYRKVENGVANLNDDGIVYLTAEEEENFIIGQGNAPLNDDGTFIRPVVKC
RQDADFPVVPPTEVNLMDVSPQQIASIAASLIPFLEHDDAHRALMGSNMMRQAVPLLHNE
APIVGTGIEKQVCEDSRTMVTAEGDGVIEYVDATTIRILYDRTEDEEFVSFEPAMKEYRI
PKFRRTNQNMTIDLRPICNKGQRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYE
DAIVLNERIVREDVLTSVHVDEYSLDVRETKRGVEEFTSDIPNVSEEATKDLDENGVIRV
GARVEPGDILIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVIIDKKL
FARAIKTRQTKQQDKIVLAKIDEEYQAKVDDLKDILVDKLMELTKGKTSQGVKDYTGAEV
ISKGSKFTMTALKNLEYGDIQTNKWTNDEHKNELIGQLIINYMKKYKLLDAEMKRKKFAI
TIGDELPSGILQMAKVYVAKKRKIGVGDKLAGRHGNKGIVSKVVRQEDMPFLEDGRPVDL
VLNPLGVPSRMNLGQIFEAILGAAGKRLGVKFATPIFDGAKLEDLAEWTDKAGLPRLCST
HLYDGETGERFDQPATVGITYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGASHVLQEILTIKSDDTVGRSKAYEAIVKGEPMPTPGIPESLNVLLHEL
RGLGLSVTLD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgaaagtaatagacaacagagtaaactttggcagcgtcaagaacccgatgccg
ttaccggatttcctcgatgtacaattaaagtctttcaaggacttcctgcagttggacact
ccgcctgaggaacgcaagaacgacggtctgtataaggttttcgccgagaacttccctatc
acagatacgcgtaacaacttcgtacttgagttcctggattactatattgacccaccccgt
tacaccatcgacgagtgtttggagcgtggtctgacttatagcgtacctcttaaggctaaa
ctgaaactttactgcacggatcccgatcacgaggatttcggtacagtgattcaggatgta
ttccttggtcctattccttacatgacggccaatggtacattcgttatcaacggtgcagaa
cgtgtcgttgtatcacagttgcaccgttcacccggtgtattcttcggtcagagcgtacat
gccaacggttcgctgctgtactcagcccgtatcatccccttcaagggttcatggattgag
ttcgcaacagacatcaacaacgtgatgtatgcctatatcgaccgtaagaagaagttgcct
gttactaccttgctccgtgccatcggtttcgagaccgataaggacattctgcagatcttc
gacctggcagaggaagtaaaggttacaaagaaaggattgaaagaagtcatcggttgcaag
ctcgcagcccgtgtgctgaagagttggaacgaggactttgtagatgaagatactggtgaa
gtagtttctatcgagcgtaatgaggtaatcatggatcgtgagactgagattacagaagat
aacatcatggacatcctggagagcggtgctgctactatcttggttcacaagaatgaggca
acggctcaggacttctctatcatcttcaacacactggcaaaagaccccagtaactctgag
aaagaggctgtgctctatatctaccgtcagctgcgtaatgcagatcctgccgatgatgcc
agtgcacgtgaagttatccagaacctgttcttctcagacaagcgttacgacctgggtgat
gtaggtcgttaccgcatcaacaagaagttgggactggacaccgagatggatgtccgcgtt
ctgaccaaggaagatatcattgagattatcaaatacctgattcagctgattaactcaaag
gctgccgttgacgatattgaccacctgtcaaaccgtcgtgtgcgcaccgttggtgagcag
ctgtcaaatcagttctctatcggtctggcccgtatgagccgcaccatccgtgagcgcatg
aacgtgcgtgacaacgaggtgttcaccccgatggacctcattaacgcaaaaaccatttca
agcgttatcaactcgttcttcggaaccaacccattgtcacagttcatggaccagacgaac
cctctggccgaggtgacccacaagcgtcgtctctctgccctgggtcctggcggtctgagt
cgtgagcgtgccggtttcgaggttcgtgacgtacactatacacactatggtcgtctgtgt
cctatcgagagccctgaaggacctaacatcggtctgatttcttcactctgcgtctatgca
aagatcaatgagctgggcttcatcgagacaccataccgtaaggtagagaatggtgtggcc
aacctgaatgatgacggtatcgtctacctcaccgctgaggaagaggagaactttatcatc
ggtcagggtaacgcacctctgaacgacgatggtacctttatccgtcctgtcgtaaaatgt
cgtcaggatgccgacttccccgtggtacctcccacagaggttaacctcatggatgtatct
ccccagcagattgcctctatcgctgcatcacttattcctttcttggagcacgacgatgct
caccgtgcactgatgggatctaacatgatgcgccaggcagtacctctgctccacaacgag
gcacctatcgtaggtaccggtatcgagaagcaggtctgcgaagactctcgtaccatggta
accgccgagggtgacggtgtgattgaatatgttgacgctacaaccatccgtatcctctat
gaccgtacagaggacgaggagttcgtcagcttcgaacccgccatgaaggaataccgtatt
ccaaagttccgccgtaccaaccagaacatgaccatcgacctgcgtcctatctgtaataag
ggccagcgtgtgaagaagggtgatattctgaccgagggttatgccactgagaacggtgag
ttggcactgggtcgtaacctgctcgtggcttacatgccttggaagggttacaactatgag
gatgctatcgtgctgaacgagcgtatcgttcgtgaggacgtgctcacctctgtacacgtg
gacgagtactcactcgatgtacgtgagaccaagcgtggtgtggaagagttcacctctgat
attcctaacgtaagcgaagaggccaccaaggacctcgacgagaacggtgtgatccgtgtc
ggtgcccgcgtagagccaggagatatcctgattggtaagatttcacctaagggtgagagc
gatccttcacctgaggagaagttgctccgcgccatcttcggtgacaaggccggtgacgtg
aaggactcttcactgaaggccaacccatcactgagtggtgtcatcatcgacaagaagctc
tttgcccgtgccatcaagacccgtcagaccaagcagcaggataagatcgtgctggctaag
atcgacgaggagtaccaggcaaaggttgacgacctgaaggacatcctggttgacaagctg
atggaactcactaagggtaagacttcacagggtgtgaaggactacaccggtgcagaggtt
atctctaagggttctaagttcaccatgacagccctgaagaacctggagtacggtgatatc
cagaccaacaagtggacaaatgacgagcacaagaacgaacttatcggtcagctcatcatc
aactatatgaagaagtacaagctgctcgatgccgagatgaagcgtaagaagtttgccatc
accattggtgacgagctgccctcaggcattctgcagatggccaaggtatacgttgccaag
aagcgtaagatcggtgtgggtgataagctcgccggtcgtcacggtaacaagggtatcgta
tctaaggttgtacgtcaggaggatatgccattcctcgaggatggtcgtcccgtagacttg
gtactgaaccctctgggtgtgccttctcgtatgaacctcggtcagatcttcgaggctatc
ctcggtgctgccggtaagcgtctcggcgtgaagttcgctacacctatcttcgacggtgca
aaacttgaagacctcgcagaatggaccgacaaggcaggtctgccacgcctctgctctacc
cacctgtatgacggtgagaccggtgagcgtttcgaccagcctgcaacagtaggtatcacc
tacttcctgaaactgggtcacatggttgaggacaagatgcacgcccgttctatcggtccg
tactcactcatcactcagcagcctcttggtggtaaggcccagttcggtggtcagcgtttt
ggtgagatggaagtctgggcactggaggcctttggtgccagccatgtgcttcaggagatt
ctgactatcaagtctgatgataccgtaggtcgttctaaggcttacgaggctatcgtgaag
ggtgagcccatgccaacaccaggcattcctgagtcactcaacgtgctgctgcacgagttg
cgtggtctgggtctgagcgtaactctcgactaa
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