Prevotella communis: L6468_01850
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Entry
L6468_01850 CDS
T09070
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcou
Prevotella communis
Pathway
pcou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L6468_01850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcou03021
]
L6468_01850 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcou03400
]
L6468_01850 (rpoC)
Enzymes [BR:
pcou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L6468_01850 (rpoC)
Transcription machinery [BR:
pcou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L6468_01850 (rpoC)
DNA repair and recombination proteins [BR:
pcou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L6468_01850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UKK62536
LinkDB
All DBs
Position
444213..448544
Genome browser
AA seq
1443 aa
AA seq
DB search
MAFKKDSKTRNNFTKITIGLASPEQILENSFGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHIELVVPIAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVIQPGALEGRKDAEGNPLLGSQKFDLLSEEEYNDIIDNQ
LSEDNYYLDDSDPNKFVAKMGAEAIYDLLQQLDLDSLSYELRDRANTDSSQQRKNEALKR
LQVVEAFRSSVEKGINRPEWMIMKILPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRN
NRLKRLMEIHAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSDSNRPLKSLSDSLKGKQG
RFRQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKS
AKKIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTA
FNADFDGDQMAVHLPLSNEAILETQLLMLQSHNILNPANGAPITVPSQDMVLGLYYITKI
RPGAKGEGLSFYGPEEAIIAHNEGKCDLHAQVKVMVDDVVDGIKVRHQVETSVGRVIVNG
IVPKEVGYVNKVISKKSLRDIIADVIKNVGFAEACEFLDGIKNLGYRMAYLAGLSFNLDD
IIIPKEKAELIAKGNEEVQQITDNYNMGFITDNERYNQVIDTWTHVNNDIGNILMKEMTE
ADQGFNAVFMMLDSGARGSKDQIKQLSGIRGLMAKPQKAGAEGHQIIENPILSNFKEGMS
VLEYFISTHGARKGLADTAMKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLECTALKSG
DEVISSLSERILGRVSVHDVVNPKTGEVIVPAGEEITEAKADMIEKAEIEMVEIRSVLTC
ESKKGVCMKCYGRNLATRRMVQKGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAANAAANA
TIVCKYESARIELEEVRTVPFDEDGRDCEMVVSRLGEMRFVDPNTKIVLSTVNVPYGSSL
YFKNGDVVAKGDKIAQWDPFNAVIVTEYAGTLKFNDVIEGVTFRAETDETTGLTEKIVTE
SKDKTKVPTCDILDANGEKIGTYNFPVGGHVVVEDGQTVKTGETLVKIPRAAAKGGDITA
GLPRVTELFEARNPSNPAIVSEIDGEVTMGKVKRGNREIIVTSKTGDQRKYLVSLSKQIL
VQEHDAVRAGTPLSDGAITPSDILAIKGPTAVQEYIVNEVQDVYRLQGIKINDKHFEIIV
RQMMRKVQINDPGDTSFLESDIIDKLDFAEENDRIWGKKVVTDAGDSETLQKGQIVTARR
LRDENTSLKRRDLRTVQVRDAVPATSTQILQGITRAALQTKSFMSAASFQETTKVLNEAA
IRGKQDFLEGMKENVICGHLIPAGTGLREFEKIIVGSKEEYERMQANRKNVLDFAEDAVI
DEQ
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaagaaagattcaaagacaagaaataatttcaccaagattaccatcggtctt
gcttcacccgagcagatccttgagaattcatttggcgaggttacgaagcctgagaccatc
aactatcgtacatacaagcccgagcgcgacggtctgttctgtgagcgtatcttcggtcct
accaaggactatgagtgcgcctgcggtaagtacaagcgcatccgctacaagggtatcgtg
tgcgaccgttgtggtgttgaggtgaccgagaagaaggtgcgccgtgagcgcagcggacac
atcgaactggtagtgcccattgcccacatctggtatttccgcagcctgcccaacaagatt
ggctatctgctgggactgcccaccaagaagctcgacgcaatcatttactatgagcgctat
gttgtgattcagccaggtgccctcgagggccgcaaggatgccgaaggcaatcctctgctg
ggttcacagaagttcgacctgctctctgaggaggagtacaatgatatcatcgacaaccag
ctgtcagaggataactactatctggacgacagcgatcccaataagttcgtagccaagatg
ggtgccgaggctatctacgacctgcttcagcagctcgacctcgactcactgtcatacgaa
ctgcgcgaccgtgccaataccgactcttcacagcagcgtaagaacgaggctctgaagcgt
ctgcaggtagtagaggccttccgttcatcagtagagaaaggtatcaaccgtcctgagtgg
atgattatgaagatactgcccgtgactcctcctgagttgcgtcctctggtgcccctggat
ggtggtcgtttcgccacatccgacctgaacgacctctatcgtcgcgtgattatccgtaac
aaccgtctgaagcgtctgatggagattcatgcacctgaagtgattctgcgtaacgagaag
cgtatgctgcaggaggctgtagactcactcttcgacaacagccgcaagtcatcggccgtg
aagagcgacagcaaccgtcctttaaagtcactctctgactcactgaagggtaagcagggt
cgtttccgtcagaacttgctgggtaagcgtgttgactactcagcccgttcggttatcgtc
gtaggtcctgagctgaagatgggtgagtgcggtctgccaaagttgatggccgcagagctc
tataagccattcatcatccgcaagctcattgagcgcggtatcgtgaagacagtgaagagc
gccaaaaagattgttgaccgtcgtgaacccgttatctgggatattctggagaacgtgatg
aagggtcaccccgtgatgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcc
ttccagcccaagctgattgagggtaaggctatccagttgcacccactggcatgtaccgcg
ttcaacgccgacttcgacggtgaccagatggctgttcaccttcccctgtcaaacgaggct
atcctcgagacccagctgttgatgctccagagccacaacatcctgaatcctgccaacggt
gcacctatcaccgtaccttcacaggatatggtgctcggtctttactatatcaccaagatt
cgtccaggtgccaagggtgagggcctctcattctacggtcctgaggaagctatcatcgcc
cacaacgagggtaagtgcgacctgcacgcccaggtgaaggtgatggttgacgatgtggtt
gacggcatcaaggtacgtcatcaggtagagacttctgtaggtcgtgtcatcgtgaatggc
atcgttcctaaggaggtaggctatgtcaataaggttatttctaagaagagtctgcgcgac
atcatcgccgacgttatcaagaacgtaggtttcgccgaggcttgcgagttcctggatggt
atcaagaacctgggttaccgcatggcctacctggctggtctgtcgttcaacctcgacgac
atcattattcctaaggagaaggcagagcttatcgccaagggtaatgaagaggtgcagcag
attaccgacaactataacatgggtttcatcaccgacaacgagcgttacaaccaggttatc
gatacatggacccacgtgaacaacgatatcggtaacatcctgatgaaggagatgaccgag
gctgaccagggcttcaacgccgtattcatgatgcttgactctggtgcccgtggtagtaag
gaccagatcaaacagctctctggtatccgtggtctgatggctaagcctcagaaagccggt
gccgagggtcaccagattattgagaacccaattctgtcaaacttcaaggaaggtatgtct
gtgctggagtacttcatctctacccacggtgcccgtaagggtcttgccgataccgccatg
aagaccgccgacgctggttacctgacccgtcgtctggttgacgtttctcacgatgtgatt
atcaatgaggaagactgcggtacactgcgtggtctggagtgcacagccctgaagagtggc
gacgaggttatctcttcactgtctgagcgtatcctgggtcgtgtcagcgtgcacgacgtg
gtgaaccccaagactggtgaggttatcgtacctgccggtgaggagattaccgaggctaag
gccgacatgattgagaaggctgagatcgagatggttgaaatccgttctgtgctcacttgt
gagtcaaagaagggtgtctgcatgaagtgttacggacgcaacctggctacccgccgcatg
gtacagaagggtgaggctgtaggtgtgattgccgcacaggctatcggtgagcctggtact
cagctgactctgcgtacgttccacgccggtggtgtggctgccaacgccgcagcaaacgca
actatcgtatgtaagtacgagtcagcccgtatcgaactcgaagaggttcgtaccgtacca
ttcgatgaggacggacgtgattgtgagatggtagtgagccgtctgggtgaaatgcgtttt
gttgaccccaacaccaagattgtgctgtcaactgtcaacgtgccttacggttcttcactc
tacttcaagaatggtgacgtggttgccaagggtgacaagattgcccagtgggaccccttc
aacgccgttatcgtaaccgagtacgcaggtaccctgaaattcaacgacgttatcgaaggt
gttaccttccgtgccgagaccgacgaaaccaccggtctgacagaaaagattgttaccgag
tctaaggacaagaccaaggttcctacctgtgacatcctcgatgccaacggtgagaagatt
ggaacctataacttccctgtgggtggtcacgtagttgttgaggatggtcaaacagtgaag
actggtgagaccctcgtcaagattcctcgtgcagctgccaagggtggtgatattaccgcc
ggtctgcctcgtgttaccgagctgttcgaggctcgtaacccatctaaccccgcaatcgta
tcagaaatcgacggtgaggtaaccatgggtaaggtaaagcgtggtaaccgtgagattatc
gttacctcaaagactggcgaccagcgcaagtacctcgtatctctgtcaaagcagatcctg
gtacaggagcacgacgccgtgcgcgcaggtacacctctgtcagacggtgccatcacccca
agcgacatcctcgccatcaagggtcccaccgccgtgcaggagtatatcgttaatgaggta
caggacgtgtaccgtctgcagggtatcaagatcaacgacaagcacttcgagatcatcgta
cgtcagatgatgcgcaaggtgcagatcaacgacccgggcgatacctcattcctcgagagc
gacatcatcgacaagctcgacttcgctgaagagaacgaccgtatctggggtaagaaggtg
gttaccgatgccggtgactctgagaccttgcagaagggtcagatcgtaacagcccgtcgt
ctgcgcgatgagaacacctcactgaagcgccgtgacctgcgtaccgttcaggtgcgtgat
gcagtgcccgcaacgtcaactcagatcctgcagggtatcacccgtgcagctctgcagacc
aagtcgttcatgtcggctgcttcgttccaggagaccacgaaggtgctcaacgaggccgct
atccgcggtaagcaggacttcctggagggtatgaaggagaacgtgatctgcggtcacctg
attcctgccggtaccggtctgcgtgagttcgagaagattattgtaggttccaaggaggag
tacgagcgtatgcaggctaaccgcaaaaacgtgctcgactttgccgaggatgcagtgatc
gacgagcaataa
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