Prevotella communis: L6468_03865
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Entry
L6468_03865 CDS
T09070
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcou
Prevotella communis
Pathway
pcou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L6468_03865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcou03400
]
L6468_03865 (mfd)
Enzymes [BR:
pcou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L6468_03865 (mfd)
DNA repair and recombination proteins [BR:
pcou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L6468_03865 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Cas3-like_C_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UKK62916
LinkDB
All DBs
Position
995492..998920
Genome browser
AA seq
1142 aa
AA seq
DB search
MNIQELQKLYANHPQVVALSKAIGKSSLKSISLDGLLASSAPLAFSALSLKIESRLLFVM
QDAEEAGYFYHDLCQVMGDKQVLFFPSSYKRAIKYGQKDPASEILRTEVLSQATHHNLLY
IVTYPEALAEMVVTRKQLDARRLTLEQDQSMSVDVICKTLREFGFREVDYVYEPGQFALR
GSILDVYSYSHEFPFRIDFFGDDIDSIRTFEVENQLSKERCDHVDIVPELTAEEEKESIL
KFLPDDTLLVTKDLQFVRESIERTYQEGFSQQAMQERMAEATEMEQRQIEKEMRRDSQII
TGSQFALDAEPFRKILLKDEKSSAVIRFNIKPQPLFHKNFELLTQTLEDYLLQGFKLYIL
ADSAKQQERLKDIFAEMKQGVEFIPVDKTLHEGFVDADGRLCLFTDHQIFDRFHKYNLKS
DKARSGKVALTLKEIQQFEIGDYVVHVDHGIGKFGGLVRMPLQNGGFQEMIKIIYQRGDA
IYVSIHSLYKVSKYKSQEDGQQPRMSTLGTGQWERLKERTKKHIKDIARDLIKLYAARRH
QKGFAFSHDTYLQHELEASFLYEDTPDQLKATQDVKADMEMQKPMDRLVCGDVGFGKTEV
AVRAAFKAAVDGKQVAVMVPTTVLAYQHYRTFQGRLKDMPVRVDYLTRARTAKQTTALLK
DLEEGKVDILIGTHKLISKSVKFKDLGLLIIDEEQKFGVSTKEKLRQMKTNVDTLTMSAT
PIPRTLQFSLVGARDLSVIQTPPPNRYPIQTEIHTFSAEIITDAINFEMSRNGQVYFVNN
RISDLTHIEEMIHKYIPDCRVAIGHGQMKPEELEKIILDFSNYDYDVLLSTTIVENGIDI
PNANTIIINSAQYFGLSDLHQMRGRVGRGNRKAFCYLLAPPLSALPVDSRRRLEALENFS
DLGSGINIAMQDLDIRGAGNLLGAEQSGFISDLGYETYQKILNEAMVELRNEEQTNPQPL
SEMEGGSQAQEQGLPSSLPRREGTGEGLPGDGPFVSDCNLETDLEMYFPDQYVPSDSERM
LLYRELDNTRNDEEVEAYCKRLIDRFGPLPPQAEELLHVVALRRYGKALGCEKIMLKQGR
MFLYFVSNARSPFYQSEAFGRIITYATTNVRRCNLREQNGKRSMVITDVPTVGEAVKVLK
QI
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaatattcaggaactacaaaaactatacgccaatcatcctcaggtggtagccttgtca
aaagccataggaaaatcttcgttaaagtcgatttcccttgatggcctcctggcttcttcc
gcgccgttggcctttagtgccctgtcgctgaagatagagtcacgcctgctttttgttatg
caggacgccgaggaggccggttatttctatcacgacctttgtcaggtgatgggcgacaag
caagtactcttctttccttccagttataagcgtgccattaaatacggtcagaaagaccct
gccagcgagattcttcgcacggaggtgctctcccaggcgacgcatcataacctgttgtat
atcgtgacttatcccgaggcacttgccgagatggtggtgacgcgaaaacagttggacgcc
cgccggttgaccctggaacaggatcagtcgatgagtgtggatgttatctgtaagacattg
cgtgagttcggcttccgtgaggttgactatgtctatgagccgggacagtttgccctgcgt
ggttctatccttgacgtttattcgtatagtcatgagttccctttccgtatcgatttcttt
ggcgatgatattgactcgatccgtaccttcgaggtagaaaaccaattgtcgaaagagcga
tgtgatcatgtggatattgtaccagaactgacagctgaggaggagaaagagtcaatcttg
aagttccttccagatgatactttgctggttacgaaagacctgcagtttgtccgtgagtcc
atagaacgcacctatcaggagggcttctcgcaacaggccatgcaggaacgtatggcagag
gcaacggagatggaacagcgccagattgaaaaagagatgcggcgtgacagtcagattatt
accggctcgcagttcgctctggatgctgagccgttccgcaagattctgttgaaagatgag
aaaagttctgccgttatacgcttcaatatcaagccccaaccgcttttccataagaacttt
gaactgttgacgcagactttggaggactatctgctgcagggtttcaagctctatatcctg
gctgacagtgccaagcagcaggaacgtctgaaagatatctttgcagagatgaaacaaggt
gtagagtttattcccgtggataagaccctgcacgagggatttgttgatgctgacggacgc
ctgtgcctgttcaccgaccaccagatattcgaccgcttccataaatataaccttaagagt
gacaaggcccgtagtggtaaggtggcacttacactgaaagagattcagcaattcgagatt
ggtgactatgtggtacatgtggaccatggtatcggaaaattcggcggactggtcagaatg
cctttgcagaacggcggttttcaggagatgattaaaattatctatcagcgtggtgatgcg
atctatgtcagtattcattctttatacaaggtatcgaaatacaagtcgcaagaagatggt
cagcagccccgcatgtcgacattgggtactggtcagtgggaacgtcttaaggaacgtacc
aagaaacatatcaaggatattgcccgcgaccttatcaaactctatgcagcccgtcgtcat
cagaagggattcgccttcagtcacgatacctacttacagcatgaactcgaggcttcgttc
ctctacgaggatacccccgaccagctcaaggctacacaggacgtaaaggctgatatggag
atgcagaagccgatggaccgactggtttgcggcgatgtgggctttggtaagactgaggtg
gccgtacgtgctgccttcaaggctgctgttgatggaaaacaggtggctgtgatggtgcct
accacggtgttggcctatcagcattaccgtaccttccagggccgactgaaggatatgcct
gtccgggtggattatcttacccgtgctcgtactgcgaaacagaccaccgcgctgctgaaa
gacctggaagagggtaaggtggatatccttatcggtacgcataaacttattagtaagagc
gtgaagttcaaggatctgggacttctgattatcgatgaggaacagaaattcggcgtgtcc
acaaaggaaaaactgcgtcagatgaagacgaatgtggataccctcacaatgagtgctacg
ccaattccgcgtaccttacagttctcacttgtcggggcccgtgacctcagcgtcatccag
acgcctcctcctaatcgttatcctattcagacggagatacacactttctctgccgagatt
atcaccgatgccatcaactttgagatgagtcgtaatggacaggtctatttcgtgaataac
cgtatcagtgacctgacgcatattgaggagatgattcataagtatatccccgattgtcgt
gtggccatcggtcatggtcagatgaaacccgaggaactggagaagattattctcgacttc
tctaactacgactacgatgtgcttctgtctaccaccatcgtggagaatggtatcgatatc
cccaatgccaatactattattatcaatagtgcacagtactttggtcttagcgacctgcac
cagatgcgtggtcgtgtaggtcgtggaaatcgtaaggctttctgctacttgttggcaccg
ccattgtcggctctgcctgtagatagtcgtcgccgactggaagctctggagaatttctct
gacttaggcagtggcatcaatatcgccatgcaggaccttgatatccgtggcgcaggtaac
ctgctgggtgctgaacagagtggttttatctctgatttgggttatgagacctatcagaag
attctgaatgaggctatggtggaattgaggaatgaggagcagactaatccccaacccctc
tcagagatggaagggggaagtcaggctcaagagcagggactgccttcgtccctccctcgc
agggaggggactggggaggggctgccgggagatgggccttttgtctccgactgtaacctt
gagactgatcttgagatgtatttccccgaccagtatgtgccttctgactctgaacgtatg
ctgctctatcgtgaactggacaatacacgtaatgatgaggaggttgaggcttattgcaaa
cgcctcatagaccgtttcggtcctttgcccccacaggcagaggaactgctgcatgtggtt
gctttgcgccggtacggcaaggccctgggatgtgagaagattatgcttaaacagggacgt
atgttcctttatttcgtaagtaatgcccgcagtccgttctatcagagtgaggctttcgga
cgtatcataacctatgccaccacgaatgtgcgtcgctgtaatctgcgtgagcaaaatgga
aaacgctctatggtgattaccgatgtgcctactgtaggtgaggctgtgaaagtattgaaa
caaatttga
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