Pyrus communis (pear): 137707611
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Entry
137707611 CDS
T10779
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137707611
Spliceosome [BR:
pcox03041
]
Complex C
Other components
Step II factors
137707611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
Cas3-like_C_2
AAA_30
TsaE
Sigma54_activ_2
AAA_16
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
137707611
NCBI-ProteinID:
XP_068302619
LinkDB
All DBs
Position
11:complement(4856635..4861372)
Genome browser
AA seq
1205 aa
AA seq
DB search
MAAADDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEIGRSCETVDEFDARLKENG
AEMPDYFVRTLLTIIHAILPPKPKPEKDASKKDGASEGKKTKFKALAIADNRDRVKEIDK
EIEMETREKHSGGEERDGEREDDRRRGRDRYRDGDRDRDRDRDRDRDHDRHRGRERDGRG
RGRDRHDRDERRRDSHYNDDDGERGRRADRYDKPKRDGYEENGIEREDGDDRRGNRDRGN
GPRKNLSDEPELYQVYKGRVSRVMDTGCFVQLNDLRGKEGLVHVSQMATRRISNAKDVVK
RDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKSSEEDAHRTNKSVSRDGPVTRTG
LSGIRIVEEDDVGPSRRPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDDEADGMLYQEEG
AEEELEIEINEDEPAFLNGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQ
QQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTISFGQR
SKLSIQEQRQSLPIYKLKKELVQAVNENQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKI
GCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILID
ENLSQYSVVMLDEAHERTIHTDVLFGLLKKLLIRRPDLRLIVTSATLDAEKFSGYFFDCN
IFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSL
YERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFY
VIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMS
PTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLL
TKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRA
KFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDV
VSAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHE
LVMTTKEYMREVTVVDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRL
SKRRA
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgacgacggtctgaagaagttggagtacctttcgctggtctccaaagtc
tgttcagagctcgaaacgcatctagggtttggggacaaagttctggcggagttcatcacc
gaaatcggacggagctgtgagacggtggacgaattcgacgcccgattgaaggagaacggc
gcagagatgcccgactattttgtccgtacactcctcactatcatccacgcaatcctccct
ccgaagccgaagccggagaaggacgcctcgaagaaagacggcgcttctgaaggtaagaaa
accaagtttaaggctttggctattgctgataatagagatagagttaaggagattgataag
gaaattgagatggagactagggagaagcactcaggcggagaggagcgggacggagagcgt
gaagacgataggcggaggggtcgggatagatatagggatggagatagagatagagataga
gatcgagatcgagatcgagatcatgataggcacagaggtagggaaagagatgggagaggc
aggggaagggataggcatgatagagacgagaggcgtagagattcacattataatgatgat
gatggggaaagagggaggcgtgcagatcgatacgataagcctaagagagatgggtacgaa
gagaatggaattgaaagagaagatggtgatgataggagaggtaatagggatagggggaat
ggtcctagaaagaacctttccgatgaacccgaattgtaccaggtgtataagggtagggtt
tcgagagtgatggacaccggttgctttgttcagttaaatgatttgagagggaaggaaggt
ttggttcatgtttcacagatggcaactcggcgaattagtaatgctaaggatgtggtgaag
agggatcaggaagtttatgttaaggtgatttctgtttcgggtcagaagttgagcctttca
atgagggatgttgatcagcattctgggaaggatttgcttccgttgaagaagagctcagag
gaggatgctcataggaccaacaagtcggtgtccagagacggacctgtgactaggactggt
ctttctgggattaggattgtggaagaggatgatgttggtccatcgcgccggccattgaag
cgaatgagctcacctgagaagtgggaagccaaacagttaattgcctcaggtgttttgggt
gtgacagagtacccaatgtatgatgatgaagcagatgggatgctatatcaagaagaggga
gctgaggaagagcttgagattgagatcaatgaggatgagccggcatttttaaatgggcag
accaggtattctgtggatatgtcccctgtaaaaatctttaagaatccagaagggtctttg
agtcgtgcagctgcacttcagtctgcactcattaaggagcgtagagaagtgcgagagcag
cagcaaagaaccatgttggattccatcccaaaggatctgaatcgtccctgggaagatcca
atgccagagactggtgagaggcatcttgcccaggagcttagaggtgttggtttgtctgca
tatgatatgcccgagtggaagaaggatgcttttgggaaaaccatcagctttgggcagagg
tctaagctatcaattcaggaacagaggcagagcttgcctatatacaagctgaagaaagaa
ttggttcaggcggtgaatgagaatcaagtgctcgttgtcattggtgagactggttctggt
aagacaacccaggtaacacagtatcttgcagaagcgggttacacgacaaagggaaagatt
ggatgtacacagccccgtagggttgctgcgatgtctgtagccaagagggtggctgaagag
tttggttgtcgtttgggggaggaagttggatatgctattcgttttgaggattgcactgga
ccagatactgtcatcaagtacatgaccgatggtatgcttcttagggagattttgattgat
gagaacctttcccaatactctgtggtcatgcttgatgaagctcatgagaggacaatccac
acagatgttctttttggattactgaagaagcttctgatccggagaccagatcttcgtttg
attgtcacctctgctactttggatgcagagaagttttcaggttatttcttcgactgtaac
atatttactatccccgggagaacgtttcctgtcgagatactctacaccaagcagccagaa
agtgactaccttgatgcatctctaattactgtcctacaaatccacttaacagaacctgaa
ggtgacatccttcttttcttgactggacaagaagagattgattttgcatgccagtctctt
tatgagaggatgaagggtcttggtaaaaatgttcctgagttaattattctaccagtatat
agtgcccttcctagtgaaatgcagtcaaggatatttgatcctgccccgccagggaagagg
aaagtggttgtggctactaatattgctgaagcatcactgactattgatgggatattttat
gtcatcgatcctggatttgcaaagcaaaatgtttataacccaaagcaggggctggattca
cttgtcattactccaatttcacaagcatcagccaagcaacgagctgggcgtgctggacgc
acagggcctgggaaatgttaccgcctctacactgagagtgcataccgtaatgagatgtcc
cctacttcaattccagaaatccagaggataaatcttgggatgactacacttacgatgaaa
gccatggggataaatgatctcctgtcttttgattttatggatcctccttcaccgcaagca
ctcatttctgccatggaacaactgtacagtttgggagcactggacgaggaggggctgctg
accaaattgggtaggaagatggctgagtttcctctcgatccaccgttatctaagatgcta
ctcgctagtgtagaccttggatgtagtgatgagatcttgaccatcattgcaatgattcag
acaggcaatatcttttacaggcctagggaaaaacaagcccaggctgatcagaagagagct
aagtttttccagccagagggagaccatctgactttacttgcagtctatgaggcttggaaa
gctaagaatttctcaggtccatggtgttttgagaactttgttcagtctcgatccttgagg
agggcacaggatgttagaaaacaacttctgagcatcatggacaagtataaattggacgtg
gtcagtgcaggaaagaattttacaaagatcaggaaggcaattacagcaggtttcttcttc
catggtgctagaaaggacccacaggagggttatagaaccctagtcgagaaccagccagtt
tatatccacccaagcagtgctctcttccagagacaaccagattgggtcatctaccatgag
ctggttatgactacaaaggagtacatgcgcgaggtgacagtcgttgaccccaaatggcta
gtagaactggcaccaaggttcttcaaagtatcagatcccacaaagatgagtaagcgcaag
cgtcaggaacgaattgaacccttatatgacagataccatgaaccgaactcttggcgtctt
agtaagcgtcgtgcttga
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