Pyrus communis (pear): 137709803
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Entry
137709803 CDS
T10779
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
Brite
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137709803
5.6.2.5 RNA 5'-3' helicase
137709803
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137709803
mRNA cycle factors
Common to processing body (P body) and stress granule
137709803
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137709803
NCBI-ProteinID:
XP_068304887
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Position
12:4204111..4217093
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AA seq
1285 aa
AA seq
DB search
MDSEPNNLFDTASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSEPA
DRDRGGGGVGSDHQSDASPVSAAPGSATKARAGGSGSNAGNNQVVDVLTPGMSVLNFEDT
GDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELYKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQST
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVIPNDSFGSV
ASAGQNADRRSNRGRGSYLPPGPPNGTHKPGVHPAGYPMPRAPLSPFHGGPLSQPYAIPT
RGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQNVGNMGSTFNFPALE
NPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQEFLGDDFKSQGSHVPYNVA
DFSTQASQSGYAVDYVTQGAQAGFPGNFLNQNSQAGYSRFGTGNDFMSQDYMPHGSQGLF
TQVGFNDPSQDEASQNHYGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPPQQQQQQ
QQPPQPQPQPQQGQTSQNQKIHYNG
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggattcggagcccaacaacctctttgacacggcgtcgcagcccgacaccgccaacgac
gcctacaccttcctcgaattcaacacccagggcgaggactttgactacccggagttccgc
gacccgattcgctctcctgtcgcctggcccaccccttcagattccttatcggaacctgca
gaccgtgaccgtggcggtggtggggtcgggtccgaccaccagtccgatgcgtcgccggtt
tctgctgccccgggcagcgccacaaaggctagggcaggtgggtcgggcagtaacgccggc
aataatcaggtggttgacgtcctaacgcctgggatgagtgtgcttaactttgaggatact
ggggatgacgacaattacgagtttggaaaaggggattttacagaacatgcgtgccggtac
tgcggcgtgtcgaacccggcttgcgttgtgaggtgtaatgtgccttcgtgtcgaaaatgg
ttctgtaattcaagggggaacacttccggctctcatattgtgaatcacctggtccgagca
aaacacaaggaagtctgtcttcataaagatagcccattgggagaaacaatccttgaatgc
tacaactgtggatgtcgtaatgtatttcttcttggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgatagatgataggtgtttcttgcagtggcttgtt
aaggtcccgtctgaacaggagcagctaagggcgcgccaaatcagtgctcaacaaataaat
aaagtagaagaactttggaagtccaatcctgatgcttcccttgaagatctcgagaagcct
ggtgtggatgatgaaccccaacctgtggccttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacaattcggtgggatattggtcttaacaagaagcgtattgct
tattttgtgtttccaaaggaagacaatgagttacgtcttgtacctggtgatgagttgcgg
cttcgttattctggagatgcagctcatccagcgtggcagtcagtgggacatgttatcaag
ttaactgcacaagaggaggttgcacttgaacttcgtgccagtcagggagttccagttgat
gtgaaccatggcttcagtgttgactttgtctggaagagtacaagttttgatcggatgcag
ggggccatgaaagcttttgcagtggacgagacaagtgttagtggatatatttaccatcat
ttgttaggccatgaagtagaggttcaaatggtccgtaatacattgccccgtcgttttggt
gcacctggtcttccggagctcaatgcatctcaagtttttgctgtaaagagtgtccttcag
aagcctataagtttgatccagggtccacctggcacaggaaaaactgtgacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtttgtgctcctagtaat
gttgctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgtcagactt
tgtgcaaaatcaagggaagctgttagttctcctgttgagcatttaacccttcattaccag
gttcgtcatcttgacacgtcagaaaagagtgaactgtacaagctacaacaattgaaggat
gagcaaggagaattgtctagtagcgatgagaaaaaatataaggcactgaagcgggcaacc
gagagggagatttctcaaagtgctgatgtcatttgttgcacatgtgttggtgctggagat
ccacgattggccaattttaggttccgtcaggtacttattgatgagtctactcagtctacg
gagcctgaatgcctgattcctttggttcttggggcaaagcaggttgttcttgttggagat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccag
tctctctttgaacgcctcgttttacttggtgtgaaaccaattagattgcaggttcaatac
cgaatgcatccagccttgtcagaatttccatctaatagcttctatgagggcacgcttcaa
aatggagtcaccatcaatgaaaggcaatcttcaggcattgattttccttggccggttccc
aatcgtcccatgttcttttatgtacagatgggccaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaatgttgaaaagattgtcacaacattcttgagg
agtggtgtagtccctagtcagattggagtgatcacaccgtatgagggacagagagcttat
attgtgaactatatgtcgcgaaatggtgctctcagacagcaactttataaggaaattgag
gttgcaagcgtagattcatttcagggaagggaaaaggattatatcatcctttcgtgtgtg
aggagtaatgagcatcagggcatcggattccttaatgatcctcgcaggctcaatgttgct
ctaacacgtgctcgatatggtattgtcattcttggaaaccctaaagttcttagtaaacag
ccactgtggaatagcttgttgacacattacaaggaacacgagtgcttggttgaggggcct
ctaaataacctgaagcagagtatggtgcaatttccaaagcctaaaaagatctacaatgat
cggcgcctattctttggaggtggtcctggagttatccccaatgacagttttgggtctgtt
gcctcagctggccaaaatgcggacagaagaagtaatcgtggtaggggttcttacctacct
cctggcccacccaatggtacccataagcctggtgtacatcctgctggatatccaatgcct
cgggcacctctttcaccattccatggaggacccctttctcaaccgtatgctattccaact
cgtggagctgtgcatggaccagttggagctgttcctcatgtccctcaacctggaagtcgt
ggttttggggcaggacgtggaaatgctggtgctccaattggcagtcatcttccgcaccag
caaggcacacaacagaatgttgggaatatggggtctaccttcaactttcctgctcttgaa
aatccaaatagccaaccatctgttggtggccccttatctcaacctggatttgtcaataat
atgccagttcaaggcccaagccaaacatttcgtgatggattttccatggcgggcatgtct
caggaatttttgggtgacgactttaaaagtcagggatcacatgttccttataatgttgct
gacttctccacacaggcttctcaaagtggatatgctgttgattatgttactcaaggagca
caagctgggtttccagggaactttctgaaccagaactctcaagctggatattctcgattt
ggtacagggaatgacttcatgtctcaggactacatgcctcatggatcacaaggcctattt
actcaggtgggctttaatgacccatcacaggatgaagcatcacagaaccactatggagtt
gcaaatgccaatcaactccagtcccagggctttatgaactcgctgtactctcagccgttt
gcccattacaacacacagccaatgaacttgcaggccccaccacaacagcagcagcagcag
cagcagccaccgcagcctcagcctcagcctcagcagggtcagacctcccaaaatcagaaa
atccactacaatggttaa
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