KEGG   Pyrus communis (pear): 137710139
Entry
137710139         CDS       T10779                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pcox  Pyrus communis (pear)
Brite
KEGG Orthology (KO) [BR:pcox00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pcox03009]
    137710139
Ribosome biogenesis [BR:pcox03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    137710139
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_HPS5 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_WDR75_2nd Beta-prop_SPT8 Beta-prop_VPS8 VPS8_N Beta-prop_IFT122_1st PEP5_VPS11_N VPS11_N
Other DBs
NCBI-GeneID: 137710139
NCBI-ProteinID: XP_068305191
LinkDB
Position
12:20503250..20506594
AA seq 467 aa
MGSGGGEAVAVCSDKRMGTGITIWNIDTGDRLLHIPTCASPARGLVCLRNQFLVAAQIHK
PGSVSGGAISMWKMNKPQKPIQSYPLEAIGPLSCTKDGLYLAGGALSGNTYLWEVANGKL
LKTWHGHDKSLSCMLFSDDGSLLVSGSDDGMICVWNLISLLDVENVESFPSPLHYSMEHK
SSITGLLTTSGISSPVLISSSLDGSYKVWDLVLGNLMHTQVYPLGITAVALHPTKQLIFS
GSIDGSIFVNKLEIGLVEDYLVGAEDHSPVLKEHNGSVTALTFSKSGLISASEDCTICVW
DITSCKIIRRFNHQKGPVTNLAVIPQSSLLPVSNHRKLSNALDVSILDKYPQPANSSEEK
ITLFPSCQPSVNFQTLGSCQQIYDMKKEGTVAAMEMKLETCLEDRMRATKMAKHVMEMNR
HLQSRLLDLMESRLSRPKSSEIDSPSTKKSKTAMLENPPLQQEEEKP
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgggaagtggtggcggtgaggcggtggctgtgtgcagtgacaagaggatgggaacaggg
ataactatatggaacatagacacaggggatcgactccttcacataccaacctgcgcttct
cctgctcgtggtcttgtgtgcttgagaaaccagttccttgtagctgctcagattcacaaa
cctggctccgttagcggcggcgccatctctatgtggaagatgaacaagcctcagaagcct
attcagagctacccgctggaggcaattgggccactttcttgcacaaaggatggtctatat
cttgcaggtggtgctctttctggaaacacttacctttgggaggttgctaacggaaaattg
ctcaaaacttggcatggtcatgacaaatctttgagctgtatgttgttttccgatgatggt
tctcttcttgtttctggttcagatgatgggatgatatgtgtgtggaacttgattagtttg
ctggacgtggaaaatgttgaaagctttccgtcaccattacattattcaatggagcataaa
tcttctataaccggcctgttaaccacgtcaggcatctcaagtccagtgttaatatcaagc
tcacttgatggctcatacaaggtttgggatctagtcttgggaaacctcatgcatactcaa
gtttatccactagggataactgcagttgctcttcacccaacgaagcagttaattttctcc
ggaagtatagacggaagcatttttgtgaacaaacttgaaatcggactggtagaggattat
ttggttggtgctgaagatcattcacctgtgctaaaagaacacaatggatctgttaccgca
ttaaccttcagcaaatcgggtctgatatccgcatctgaggactgcaccatctgcgtttgg
gacatcaccagttgtaaaatcatccgaagattcaaccatcagaaagggcctgtgactaat
ctggcagtgattccacagtcctcgttgcttccagtgtcaaaccatcgtaaactatctaat
gcacttgatgtttctatcctcgacaagtatccgcaacctgcaaactcatcagaggagaaa
atcactctttttccatcatgccaaccctccgtgaatttccaaaccttgggttcatgccaa
caaatatatgacatgaagaaagagggcactgttgcagcaatggagatgaaattggaaaca
tgtctagaggaccgaatgagggcgacaaaaatggcaaagcatgtgatggagatgaacagg
catttgcaatcacgtttgctagacttgatggagagcagattgtcgaggcccaagtctagc
gaaattgattcaccttcgacgaaaaagagcaagactgccatgcttgaaaaccccccattg
cagcaggaggaagagaagccataa

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