Pyrus communis (pear): 137710411
Help
Entry
137710411 CDS
T10779
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137710411
03015 mRNA surveillance pathway
137710411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137710411
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137710411
mRNA cycle factors
P-body specific factors
137710411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
137710411
NCBI-ProteinID:
XP_068305526
LinkDB
All DBs
Position
1:40538760..40546042
Genome browser
AA seq
523 aa
AA seq
DB search
MKEPLVRTKVLIRHLPPSLSQSDLLHQIDHQLADRYNWLCFRPGKNSQKNQRYSRAYIDF
KRPEDVFEFAEFFDGHLFVNEKGAQFKAIVEYAPSQRVPKPSTKKDGREGTIYKDPDYLE
FLKLIAKPVEHLPSAEIQLERKEAEQAGGAKEAPIVTPLMEYVRQKRAIGSGTQVSSVVR
KVRRRVGAASVSKRGSPSTKRVSEKKKYIIKDGTKQTSQRDKSTFNVVPRREDQLARSSG
KETLENEIGSVSGIPVISDSGKKKILLIKGKEREIPPAEGMSQLGSSPVSHAPKQNQRRE
ATGRMIRSILLNNEGRQSQTSTETQPQQKIQSLNSDVKRVSRPSNARLGLNGQVSTNELN
SMSSEGNRKRATVDRFTKKDLHSTTSVSERQEKNTRNKDRPDRGVWAPLRRADSSCASDE
HLPSSGVQRPELIYDSFEGHGEGKDDSSYGSRTGEVINPTSGRNSSHVDNGSHRHFGRHG
SAHNMKDDGSVNVGEGKPSKKGASVHGTPEQKQVWVQKSSSGS
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagccattggtgaggacgaaggtcttaattcggcacttgcctccgtctctgtct
cagtccgatctcctccaccaaatcgaccaccagctcgccgaccgctacaactggctctgc
ttccgtccaggaaagaatagccagaagaaccagaggtattctcgggcctacatagatttc
aagcgacctgaggatgtttttgagtttgctgaattctttgatggacacttgtttgtcaat
gagaagggggctcaattcaaggctatagttgaatatgcaccctcacagcgtgttccaaaa
cctagtacgaaaaaggatggccgtgaagggaccatatataaagatcctgattatttggag
ttcctcaaacttattgcaaagcctgtcgagcatcttcctagtgcagaaatacagctggag
agaaaggaagcagaacaagctggtggtgcaaaagaagctcctattgttacacccctcatg
gagtatgttcgtcagaaacgagctattggaagtgggactcaggtttcatccgttgttcgg
aaggttagaagaagagtcggggctgcctctgttagcaaacgtggctcaccttctacaaaa
cgggtctctgagaagaaaaagtacataataaaggacggtactaaacagacaagtcaaagg
gacaagtccactttcaatgtggtacccaggcgagaggatcagttggctcgttcaagtgga
aaagaaacattagaaaatgaaattggttctgtttcaggaatccctgtgatttctgactct
ggaaagaagaaaatcttacttattaaaggaaaagagcgtgaaatacctcccgctgagggt
atgtcacaacttggaagttctcctgtttcacatgctccgaagcagaaccaaaggcgtgag
gctactggaagaatgatcagaagcatacttttaaataatgagggacgccaaagtcaaact
tcaactgaaactcagcctcagcagaaaattcaaagtctgaactcagatgttaagcgagta
tctcgaccttccaatgcaaggttagggctgaatggtcaggtctctactaatgagcttaac
tcaatgagctctgaagggaatagaaagagggcaacagttgatagatttacaaaaaaggac
ctgcatagtacaactagtgttagtgagaggcaggaaaaaaatacacgaaacaaggataga
cctgatcgtggtgtttgggctcctcttcgtcgtgctgatagttcatgtgctagtgatgag
catttgccatcctccggggtacaacgccctgaattaatatatgattcctttgaaggtcat
ggagaagggaaggacgactcttcttatggaagcaggactggagaagttataaaccctaca
agtggacgtaatagttctcatgtagacaatggttcacatagacattttggtcgccatgga
agtgcgcataatatgaaagatgacggttctgtaaatgtaggtgaggggaagccatctaaa
aaaggtgcttctgttcatggtacccctgagcagaaacaagtgtgggttcagaaatcttcc
tcaggttcttag
DBGET
integrated database retrieval system
