Pyrus communis (pear): 137710632
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Entry
137710632 CDS
T10779
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137710632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137710632
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
137710632
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_14
TPR_16
TPR_8
TPR_12
TPR_9
TPR_15
TPR_20
BTAD
TPR_7
TPR_10
Motif
Other DBs
NCBI-GeneID:
137710632
NCBI-ProteinID:
XP_068305808
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All DBs
Position
12:262750..271913
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AA seq
1180 aa
AA seq
DB search
MQHTDPEKEGKLRRLQESVEAHPDDPSLRFQLGVLLWKEWDDKEKAAEQFLVAAKLKPEI
EKGGAFTYLGLYYAGLGSESHTQRALKCFQKAVSLNPDDSLSGEALCDLLDQQGKESLEV
AVCREASQNSPRAFWAFQRLGYLQLHQNKCSDAVHSLQHAIRGYPTSAHLWEALGLAYQR
LGRFTAALKSYGRAIELEGTRIFALLESGNTFLMLGSYKKGVETFQQALEISPKSVSAHY
GLAAGMLGLAKECNNLGAYRWGATVLEEASRVAWMSTQLAGNLSSIWKLHGDIQLTYAKC
YPWMEEGNGLEFDMESFDNSILSWKRTCCLAAKTARCSYQRALHLAPWQANMYTDIAVTS
DLIDSLDNSSGHDLSAWQQSEKMALGALLLEGDNSEFWVALGCLSDHKALKQHALIRGLQ
LNVSLAVAWAYLGKLYRKQGEKQFARQSFDCARSIDPSLALPWAGMSADFHAGESAVGEA
YESCLRAAQILPLAEFQIGLAKLALASGNLSSSQVFEAIRQAMQRAPHYPECHNLNGLVS
EAQCNYQSAAVSYRLARCAITNLSGSDRKLHMTDISVNLARSLSKAGNALDALHECEDLK
KEGLLDVEGLQIYAFSLWQLGETNLALSVVRSLAVSVSTMEQKSAAAPVVFICRLLYYIS
GLDSAINSILKMPKQLFRSSKISFIVSAIHALDQSNRLQSIVSSTRDYLKSHEEITGMHF
LIALGKLVKHGSECCLGYQSGVNHLRKALHMYPNSSLLRNFLGYLLLSTEEWNDTHIATR
CCNVDTMNPIEGGLKSAYEILGAGAVACYAVGTCNPKFSYPTCTYQCLNEPGTIQQLQKC
LRREPWNQNIRYLLVLNLLQKAREERFPCHLCIILERLITVALSDEFYHNDDSSYEYKKF
QLLLCASEICLQGGNLTGCINHATNASSIMLPDGYLFFAHLLLLRAYASEGNMVNLQKEY
IRCLQLKTDLHIGWICLKLMESRYEVQTDLDMLELSFRECPTESMNSRNMWGAIFSLVKG
LICIWNQDIVSAEEFLAQACSLAGAECSLLLCHGATCMELSRRGCASQFLSLAIRSLVKA
QEASLIPLPIVSALLAQAVASLGSKEKWEKNLRLEWPTWPPEMRPAELFFQMHLLAKQSK
ASPQSSSVEFCQSPQRWVLRAIHTNPSCMRYWTVLQKFVE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcaacacacggacccagaaaaggaagggaagctccgacggttgcaggagagcgtagag
gcccatccagatgacccctcccttcgcttccaactgggagtattgttgtggaaagagtgg
gatgacaaggagaaagcggcagagcagttcctagtcgccgcgaaattgaagcctgagatt
gaaaagggaggggcattcacatatctagggctttattacgcgggtcttggctccgagtcc
cacacccagagagctctcaagtgtttccaaaaagctgtctctctcaatcctgatgactcc
ctttctggggaagccttgtgtgatttgttggaccaacaaggaaaggagagcttggaggtg
gccgtgtgccgggaggcttcccaaaattcacccagggccttttgggcttttcagagactg
ggttacttgcagctccatcaaaacaaatgctctgatgctgtccacagtcttcaacatgcc
attcgaggctatcctacctccgcacatctctgggaggctcttggccttgcgtaccagcga
ctaggcaggttcactgctgctttaaagtcctatggaagagccatcgaattggagggtaca
agaatatttgcgttgcttgaaagcggaaacacctttttgatgcttggttcctataaaaag
ggagttgagacatttcagcaagctttagagatctcccccaaaagtgtctctgcacactat
gggcttgctgctgggatgcttggtttggccaaggaatgcaataatttgggagcatataga
tggggagctacagtgctagaggaggcatctagagttgcctggatgagcactcaattagct
ggaaatttgtcatctatttggaaactgcatggtgacatacagcttacttatgcaaagtgt
tatccatggatggaggagggaaatggtttagaatttgatatggaatcttttgataattcc
atcctttcatggaaacgtacctgctgtttggctgcgaaaactgccaggtgctcttatcaa
cgagctttacacttggccccatggcaagctaatatgtatactgacattgcagtaacttca
gatctcatagactctttagacaacagttctggacatgacttaagtgcttggcagcaatca
gagaagatggctttgggagccttgttacttgagggtgacaattctgagttttgggtagcc
ttgggatgtttgtctgatcataaagcattgaaacaacatgctctaatcaggggattgcaa
ttgaatgtatctctagctgttgcttgggcatacctagggaagctttatagaaaacaaggt
gagaaacaatttgctagacaatcatttgattgtgccagaagtatagatccttcacttgct
ttaccatgggcaggcatgtcagctgattttcatgctggagagtctgcagtcggagaagct
tacgagagctgcttacgagctgcacagatattgcctcttgccgaattccaaattggtctt
gcaaagcttgctcttgcttcagggaatctttcatcttcacaggtctttgaagccatcagg
caggccatgcagcgtgcacctcactatcctgaatgccataatttgaacgggctagtttct
gaggcacaatgcaattatcagtctgctgccgtttcttatagactagcacgctgtgcaatc
accaatttgtcaggcagtgacagaaagttgcatatgacggatatatctgtcaatttggcc
cgatcccttagtaaggcagggaatgctctagatgctttgcacgaatgtgaagatttgaag
aaagaagggttgctcgacgtggaaggtttgcaaatatatgctttctccttgtggcaactt
ggtgagactaacctggctctttctgtggtaagaagtctggctgtgagcgtttctacaatg
gagcaaaaatctgcagctgcccctgttgtttttatctgtagactcctttattatatttct
ggactggattcagccatcaatagcattctgaagatgccaaagcaactatttcggagttcg
aagatcagtttcatagtatctgctattcatgctctagatcaaagtaatcgtcttcagtct
attgtgtcaagcacccgtgactatcttaagtctcatgaagagataactggaatgcacttt
ttgatagcacttggtaaactagtaaaacatggatcagaatgctgtcttggatatcaaagc
ggagttaatcaccttaggaaagctcttcatatgtatcctaacagtagcttattaaggaat
tttcttggttatcttttgttgtccactgaagaatggaatgatacccacattgcaactagg
tgttgcaacgtcgatactatgaatccaattgaaggtggtttaaaatcagcatatgaaatt
cttggtgcaggagcagttgcttgctatgctgttggcacttgcaatcccaagttctcttac
ccaacatgcacataccagtgcctgaatgaacctggaaccatccagcaactacagaaatgt
ttacgcagagaaccatggaaccagaacataaggtatttgcttgttctcaatttactgcag
aaggcacgtgaagagagatttccttgccatctttgtattatacttgagcggctaataact
gtagctctttccgatgaattttatcataatgatgactcatcttatgaatataagaaattc
cagcttctactttgtgcttctgagatctgtttgcaaggtggtaatttgactggctgtatc
aaccatgccacaaatgcttcatcgattatgctccctgatggctatcttttctttgcacac
ttgctactactccgtgcctatgcctcagaaggtaatatggtaaaccttcaaaaagagtat
ataagatgcttgcagctcaagacagatcttcatattggttggatatgtctaaaactcatg
gagtctcgttatgaagtgcaaactgacttggatatgttagaactgagcttcagagaatgc
ccaacagagtcaatgaattcacggaatatgtggggggctatattcagtctggtgaaaggc
ttgatttgtatatggaaccaggacattgtttctgcagaagagtttcttgctcaagcttgt
tcattggcgggtgctgagtgcagcctcctgctttgtcatggtgccacctgtatggagctt
tcccgccgggggtgtgcttcacagttcttatcacttgccataaggagtcttgttaaagct
caagaagcttctctcattcccttaccaattgtctcagcattactagcgcaagcagtagca
agtcttggctcaaaagagaagtgggagaagaacctccgtcttgaatggcccacttggccg
ccagaaatgaggcctgctgagctgttcttccagatgcatttgcttgcaaaacagtcaaaa
gctagtccacaatcttccagtgtggagttttgccagagtccgcaaagatgggttcttcga
gcaattcatacaaacccttcttgtatgagatattggacggttttgcagaagtttgtggaa
tga
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