Pyrus communis (pear): 137710812
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Entry
137710812 CDS
T10779
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
pcox Pyrus communis (pear)
Pathway
pcox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
137710812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137710812
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
137710812
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
137710812
NCBI-ProteinID:
XP_068306048
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All DBs
Position
12:24408228..24413572
Genome browser
AA seq
942 aa
AA seq
DB search
MDANFEDHSKLPELKLDAKQSQGFLSFFKTLPNDSRAIRLFDRRDYYTAHGENATLIAKT
YYRTTTALRQLGSGSNGLSSVSVSKNMFETITRDILLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRVLGLAEFIDDSH
FTNVESALVALGCKECLLPLESGKTSESRTLHDALGRCGVMLTERKKTEFKMRDLVQDLS
RLVKGSIEPVRDFVSGFEFAPGALGALLSYAELLADESNYGNYSIQRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLMHNLEKKRAGLQHIVKLYQSCIRLPYIKSALERYDGQ
FSSLTKERYWEPLELWTDDRHLNKFIALVEAAVDLDQLENGEYMISSSYDPALSALKEEQ
ESLEHQIQNLHKQTANDLDLALDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRIVEEYKSCQKELVNRVVQTTTTFSEVFWSVAGLLSELD
VLLSFADLASSCPTSYTRPVITPPDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDSASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICDHLVEVIKAPTLFATH
FHELTALAHENVVEDTNMKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSATTVTPNDATEEVGLKRKREHDSGDMSKGAARAHKF
LEEFSNLPLETMDLQQALQKVSKMKDELQKDAANSQWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgccaattttgaggaccacagcaagcttcccgagctcaagctagatgcaaagcaa
tctcaagggtttctctcattcttcaaaaccctccccaatgattcaagagctattcgattg
tttgatcgtcgggactactatactgctcatggtgaaaatgccactctcatcgcaaagacc
tactaccgtaccaccactgctttacggcagttgggtagcggatctaatggcctatccagt
gtgagtgttagtaaaaatatgtttgagacaattacacgtgatatactactggaaagaaca
gaccacactcttgagatttacgagggtagtggctcaagttggaggctggtgaaaagtgga
acgcctggaaaccttggcagttttgaagatgttttgtttgccaacaatgagatgcaggat
accccagtggttgttgcgctattacctaactttcgggaaaatggttgcacagttgggtta
ggatatgttgatctaactaaacgagtacttggattagctgaatttattgatgatagtcac
tttacaaatgtggaatcggctttagttgcacttggttgcaaggaatgccttctgcctcta
gagagtggcaaaactagcgaaagtagaacattgcatgatgcactgggtagatgtggtgtg
atgttaactgagaggaagaagactgaatttaagatgagggatttggttcaggatcttagt
cggcttgtcaaaggctccattgaaccagttcgagattttgtgtcagggtttgagtttgca
cctggtgcattaggggcattgctctcttatgcagaattacttgctgatgagagcaattat
ggaaattatagcattcaaagatataatcttgatagctatatgaggttagattctgctgct
atgagggcacttaatgtcctggaaagcaaaaccgatgcaaacaaaaatttcagtttgttt
ggtcttatgaataggacttgtactgctggaatgggtaaaagattactgcacatgtggcta
aaacagcctttattggatgtaaatgaaatcaactcgaggctagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagacatc
gagcggctgatgcacaatcttgagaagaaaagagctggtttgcagcatattgtgaaactt
tatcagtcatgtataagacttccctacattaagagtgccctagaacgctatgatggacag
ttctcttcactgaccaaggaaaggtattgggaaccccttgagttatggactgatgatcgc
cacttaaataagttcattgctctggtggaagctgctgttgaccttgatcaacttgagaat
ggagagtacatgatatcatctagttatgacccagcactgtctgcactgaaggaagagcaa
gagtcgttggagcaccaaatacagaatttgcacaaacaaactgccaatgatctcgatctc
gccttagataaggctttaaaattagataaaggtacacaatttgggcatgttttcagaatc
acaaagaaggaagagccaaaaatacggaagaagctcacaacacaattcattgtcctggaa
acccgaaaggatggagtgaaatttaccaacacaaagcttaaaaagttaggggatcagtat
caaagaatagttgaagagtataagagttgtcagaaagagcttgttaaccgagttgttcaa
actacaacaactttctctgaggtgttctggtctgtagctgggttgctctctgaattggat
gtcttacttagttttgctgatttggcttctagttgtcctacttcttacactaggccagtc
atcacgccaccggatgaaggggatattatattagaaggcagtagacatccctgtgtggag
gctcaggactgggtgaattttatacccaacgattgtaaacttgtgagaggaaagagttgg
ttccaaatcatcacaggtcccaatatgggtggtaaatcaacatttatccgacaggttggt
gtgaatattctgatggcacaagttggttgtttcgttccttgtgactcagctagcatttct
gttcgtgattgcatttttgctcgggtgggagctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgagactgcatctatactgaaaggagcaacagacaagtca
ctaataattattgacgagttaggccgggggacttcaacttatgatggattcggtttagct
tgggccatttgtgaccaccttgttgaagtgattaaagcacctaccttattcgcaacccac
tttcatgaattaactgcattagcacatgaaaatgtcgttgaggacactaatatgaagcaa
attgttggcgttgcaaactatcatgttagtgcacatattgactcatcaagccgcaagttg
actatgctgtacaaggttgagccaggggcttgtgatcaaagtttcggtattcaagttgca
gagtttgcgaactttcctgaaagtgttgtttcccttgctcgagaaaaagctgctgaactg
gaggatttctctgctactacagtcacgccaaatgatgctacagaagaggttggtttgaag
cgcaagagagagcacgactctggtgatatgtctaaaggagctgctcgggcgcacaagttt
ctggaggagttttctaatctgccattggagacaatggatttacagcaggctctgcaaaaa
gttagcaagatgaaggatgagttgcagaaggatgcagctaattcccaatggctccagcag
tttttctag
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