Pyrus communis (pear): 137711053
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Entry
137711053 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137711053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137711053
03012 Translation factors [BR:
pcox03012
]
137711053
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137711053
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137711053
Translation factors [BR:
pcox03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137711053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
ATPase
Dicer_dimer
AAA_30
Motif
Other DBs
NCBI-GeneID:
137711053
NCBI-ProteinID:
XP_068306356
LinkDB
All DBs
Position
12:25077887..25085849
Genome browser
AA seq
1232 aa
AA seq
DB search
MPYSALFQGYIFRTTTMSLKHSTTSTTPVLVSLRGTHHHHRHRHHVALIRPSLLLGCSMR
NSRYHHSLCLAPARNWNACYYLPRYAGDVTCQASSRAAELDWKQRQQLRSSAVPFYQQNL
SYGRFAYQDASASEESDAELGSSQRQMGGSTLDNIDEWRWKLTMLLRNKDEQELVSREKK
DRRDFDHLSALASRMGLYSRQYSRVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVD
AHLKAYLSQKPMSQGNLSDFSLSRSNSSRSITNDGGHYGQQEPLIQNTDAMEKILQRKSL
QLHNKQRHWQESPEGQKMLELRKSLPAYKEKDALLKAVSENQVVVVSGETGCGKTTQLPQ
YILESEIEADRGASCSIICTQPRRISAMAVSERVAAERGENLGESIGYKVRLEGMKGRDT
RLLFCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM
SATLNAELFSSYFGRAPTIHIPGFTYPVRTHFLENILEMTGYRLNQYNQIDDYGHEKSWK
MQKQAQGFKKRKSQIASAVEDVLEAADFREYSPRTQESLSCWNPDSIGFNLIESLLLHIV
RKERPGAILVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMPSSEQKLIFDKPED
GVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGR
AGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPP
EPLSVQNAVEYLKIIGALDDNEDLTVLGRHLSVLPVEPKLGKMLILGSIFNCLDPVMTVV
AGLSMRDPFLMPHDKKDLAESAKAQFSAHDNSDHLALVRAYDGWRNAERTESGYEYCWRN
FLSVQTLKAIDSLRKQFFFLLKDAGLADHNTESCNTWSHDEHLVRAVICAGLFPGICSVV
NKEKSIMLKTQEDGQVMLYSSSVNGSIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLL
LFGGNISMGGLNGHLKMLGGYLEFFMNPALADTYLCLKKELDELIHNKLLNPKLDMQSHT
NLLSALRLLVSEDQCEGRFVFGRKVPVPSQKATQEKLPKLKGTMKKVAENNNYKNHLQTL
LTRAGHDVPTYKTKPLKNNQFRSTVIFNGLNFVGKPCNNKKEAEKDAAAEAVLWLKGENH
SSSTDIDHMSMLLKKSRKTSQKRTSFDSAKWG
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactccgccctcttccagggctatatattccgaaccaccaccatgtccctcaaa
cactccaccacttccaccacccctgttctcgtctctctacgcggaacccaccaccaccac
cgccaccgccaccacgtagctttgataaggccgtcgctgctactgggatgctccatgagg
aacagccggtaccaccactcgctctgccttgctcctgcccggaattggaatgcgtgctat
tatctgccccggtacgccggggacgtcacgtgccaggcatcctctcgggcggcggagctg
gattggaagcagaggcagcagctgaggagttcggcggtgccgttttaccagcagaatttg
agctatgggcggtttgcgtaccaggacgcctccgcgagtgaggagtccgatgccgaattg
gggtcgtctcagcgccaaatgggtggttcgacccttgataacattgatgaatggagatgg
aagttaaccatgcttcttcgcaacaaagacgagcaagaattggtgtccagggaaaaaaag
gatagacgcgattttgatcatctttcagcactggcaagcaggatgggtttgtatagccgt
caatattctagagttgtagtatttagcaaagttcctcagcccaattacagacctgatctt
gatgataagcggccacaaagagaggttgtcttaccttttggacttcatagagaagtagat
gctcatctcaaggcctacctatctcaaaagccaatgagccaaggaaatttgtcagacttt
tccttgtcaagatcaaacagtagtagaagcattactaatgatggaggacattatgggcag
caggagcccttgatacagaatactgatgccatggagaaaattcttcagcggaaaagcttg
caactgcataataagcaacgacattggcaggaatcgccagaaggtcaaaagatgcttgag
cttcgtaaaagtctgcctgcatacaaggagaaagatgcactgttaaaagctgtatcagaa
aatcaggtcgtagttgtctccggcgaaacaggttgtggtaaaactacacaacttcctcag
tacattttagaatctgagattgaagctgatcgtggagcttcctgcagtattatttgtacc
cagcctagacggatatctgccatggctgtttctgaaagagtagctgcggaacgaggggag
aatctgggggaatctattggttacaaagttaggcttgaagggatgaaagggcgggacacc
cggcttcttttttgcaccacgggcatattattaaggagattacttgttgacagaaagttg
agaggtgttacacacgtcattgttgacgagattcatgaacgcggaatgaatgaagatttt
cttcttattgttctgaaagaacttctccctcgccggccagagttgaggttgattttgatg
agtgccaccctaaatgctgagcttttctcctcctactttggtcgtgctccaacgatccat
attcccgggtttacttacccagtccgaacacattttctggagaacattctagaaatgact
gggtatcggttaaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaa
atgcagaaacaagctcaaggtttcaaaaagaggaagagccaaattgcttctgccgtagag
gatgtacttgaagctgccgactttagggagtacagtccaaggactcaggagtctctgtcc
tgttggaatcctgactctattggttttaacctcattgagagtcttcttttgcacatagtc
aggaaagaacggcctggcgcaattttagtttttatgacgggttgggatgacataaactcc
ttgaaggatcaactccaagctcatcccctattaggagatcctagcagggtcctattgctg
gcatgtcatggttccatgcctagctctgagcagaaattgatatttgataagccagaagat
ggtgttcggaaaatagttctagctacaaacatggctgagactagtatcactatcaatgat
gtagtttttgttgttgattgtggaaaggcaaaagagacatcatatgatgcactaaataac
actccctgtttgcttccttcctggatttcaaaggctgcttctcggcaaagaagaggcaga
gccggtcgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgcc
tttgctgattatcagttgcctgaacttttgaggactccgttgcaatcattatgtttacaa
atcaaaagtttacaacttggaagtatttcagagttcctatctaaggccttgcagccaccg
gaacctctgtcggttcaaaatgctgttgagtatttaaagatcattggggctttagatgat
aatgaagatctgacagtgttaggacgtcacctgtcagtgcttcccgttgagcctaaactt
ggaaaaatgctcatattggggtctattttcaactgtttggatccagtaatgactgttgtc
gcaggccttagtatgagagacccattccttatgccgcatgacaagaaggatcttgcagag
tccgcaaaagcacagttctctgctcatgataacagtgatcatcttgctcttgtccgagct
tatgatggttggagaaatgctgaaagaacagagtctggctatgagtactgctggagaaac
tttctttctgtacaaactctgaaagccattgactctcttcggaagcagttcttctttttg
ctcaaggatgcaggtctggctgaccataatacagaaagctgcaatacatggagccatgat
gagcatcttgtccgagcagtcatctgtgctggattatttcctggaatatgctctgtcgtg
aacaaagagaagtcgattatgcttaaaacacaggaagatggacaagtgatgctatactcg
agttctgtcaacggaagcatacccaaaattccatatccatggctagtcttcaacgaaaag
gtgaaagtgaattcggtttttctccgggattctactggtatatctgattctgtgctcctt
ttgttcgggggcaacatttccatgggtggcctgaatgggcacttgaagatgctgggagga
tacttggagtttttcatgaatcccgcattagcagatacatatctttgcttaaagaaggag
cttgatgaactgattcataataagctcctgaatcccaagttggatatgcaatcacataca
aacctcctatcggctctaagattactggtctcagaggatcaatgtgagggtagatttgta
tttggtcgcaaggtgccagtgccctcacagaaggcaacacaagagaagttaccaaagtta
aaaggcaccatgaagaaagttgcggagaacaataattacaaaaatcacctgcaaacattg
ctcaccagagccgggcatgatgtacccacgtacaaaacaaaaccattgaaaaacaatcag
ttccgttccacagtgatcttcaatgggttgaactttgtggggaagccttgcaataataag
aaagaagcagagaaagatgcagctgcagaagctgtactctggttgaagggagagaaccat
tcttcgtccacagatattgaccatatgtcgatgcttcttaagaaaagtagaaagacaagc
cagaaaaggacctcatttgatagtgccaagtggggttaa
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