Pyrus communis (pear): 137712766
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Entry
137712766 CDS
T10779
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcox Pyrus communis (pear)
Pathway
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137712766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcox03021
]
137712766
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137712766
Transcription machinery [BR:
pcox03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137712766
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137712766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
137712766
NCBI-ProteinID:
XP_068308022
LinkDB
All DBs
Position
13:1182700..1189853
Genome browser
AA seq
1029 aa
AA seq
DB search
MEMESSRRPFSGSNEPGLKKPRLAENPNGRAFGQRPGGGANPVLSRFRVTDKDTGSDDPN
RGGGGYVPQPLQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLHAAKAVAATVCSHI
IEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVEPPIHQSMRHLFGTW
KGVFPAQTLQMIEKELGFSSTANGSSTGAATSRPDSQSQRQAHSIHVNPKYLERQRLQQP
TRNLQQSNADALSERVHEKNIDAEYGEYEYGSDLPGNSNPGIGRIGGKITETLPTQRNGV
NIRHGLASYSAPKSANADPRLKAAPGIATRNGGGLSSSWKNSEEEEFMWDDMNSRSTDHG
PSDISSNSRKDHWASDDSERLGFGGHFRKPKTVNDYASTADPDTSADPTEQKDPSAFGHR
ISSPWTLQDSIGVDRLTPSGTPVISSVHSDRYASSLSGLSTSGDFSVARMGSRAQVASSR
VGALSIGFSAASGPTGALGKQQQLQSVRAASPSGQSLMHQYSPSPTSTVQHPRHHLQSLA
EQDLAEDPLPIPTPNARLGSKAKSQPQDLSLSIPAIQSRHKYASRQQPDSIESESFGHTK
KPHVLPVSTFSTPSTVGDSIPDHSNVIAAETSGQLSTSSLLAAVMKTGILSDKSITGSLP
NLNLRDMGHIPSLPGFQSPFPSGPPPTQVALPGSKVASALTSGHLSGDNSPAASNVSQKE
VGHLPLPHSQPPSSLEGSASASSSTVVNNSSDPISSLLSSLVAKGLISASKSESLAPVPS
QKPTEPQNKSLGGPATSLVSVSPVSVSTSLPVSSRTDDASLPEPAAKTSAALPQITKTEI
RNLIGVEFKPDKIREFHPAVIDELFNDLPHKCSICGLKLKLRERLERHLEWHASKNPKAN
GSAMASRKWYPNLTSWVAGKAGPPLVPEANNSIDEPNETMDIDEPMVPADENQCACVICG
NIFEDFYRQERDEWMFKGASYMSIPSGAGEMETTEESVLKGPIVHVNCTVESSLSDLGLP
GHVKLEPEI
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcgtaggccgtttagcggatcgaatgaaccaggcttgaagaag
ccccgattggccgaaaacccgaatggacgagcttttgggcagagacctggtgggggagct
aatccagtgctgtcaagattcagagtgactgataaagacaccgggagcgatgacccgaat
cgcgggggtgggggctatgtgccgcagccactgcagcatcaggagcttgtgagccagtac
aagacggcgttggcggagctcaccttcaattcaaagccaattattaccaatctgacgata
attgccggtgagaacctccacgcggcgaaggcggtggcggcaactgtatgcagccacatt
attgaggttcctagcgagcagaagttaccatcactttatcttttggacagtattgtaaag
aatatcggaagggattatatcaaatattttgctgtcagactccctgaggtgttctgcaag
gcatataggcaggttgaacctcctatacatcaaagtatgcgacatctttttggaacatgg
aaaggagtgtttcctgctcagacacttcagatgattgagaaagaacttggattttcttct
acggcaaatggttcatccactggagcagcaacatcaagaccagattcgcagtcacagcga
caagcacatagcattcatgtgaatcccaaatatttggaaaggcaacgtcttcagcagcca
actaggaatttgcagcagtccaatgcagatgcactaagcgagcgtgttcatgagaagaac
attgatgctgaatatggagaatatgaatatggttctgatcttcccgggaattcaaaccca
ggaattggaagaattggtgggaagattacagaaacactacccacccaaagaaatggtgtt
aatatcaggcatggacttgcaagttactcggcacctaaatctgctaatgctgatcctcgc
ttaaaggcagcaccaggcattgcaactagaaacggtggtgggctttctagtagctggaag
aattctgaggaagaggagttcatgtgggatgatatgaactcaagatcaacagatcatggc
ccctcagatatttctagtaactcaagaaaagatcactgggcctctgatgattcagagaga
ttggggtttggaggtcattttcgtaaaccaaaaactgtaaatgattatgcatcaacagct
gatccggatacctctgctgaccctactgaacagaaagacccatctgcttttggtcaccgg
atttcatcaccttggacattgcaggactctatcggtgttgacaggctgaccccttctggt
actcctgtcattagttcggttcactcagatcgttatgcttcaagtttaagtgggctatcg
acaagtggagatttttctgtggccaggatgggaagtagagcacaagtagcatcttctcgc
gttggagcgttaagcatcggatttagtgcagcatcagggcctactggagctttagggaaa
cagcagcaacttcagtctgtgagagctgcatcaccatctgggcagtcactgatgcaccag
tattctccctcacctacatcaacagtacaacaccctcgtcatcatttgcaaagtttagct
gagcaagaccttgccgaggaccctttgccaatcccaactcccaatgctcgactgggtagc
aaagcaaaatcacagcctcaagatttatctttgtcaattcctgccatccaatcaaggcac
aaatatgcctctcgacaacaaccagacagtatagagtctgaatctttcggtcacactaag
aagccccatgtgctaccggtctccactttttcaactccgtcaactgttggagattctata
ccagatcattcaaatgtcattgctgcagaaacctcaggacagttgagcactagtagtttg
ttggctgccgttatgaagactggaattttatctgacaaatcaattactggtagcctaccg
aatttgaatcttcgggacatgggacatattccatcactgccaggttttcagtctcccttt
ccaagtggacctccccctactcaggttgcactcccagggtccaaggttgcctcagcactt
acatcaggtcacctttctggtgataactcgccggctgcctcaaatgtatcacagaaggag
gtaggccatctgccacttccacatagccaacctccttcatctctcgagggtagtgcgtca
gcaagttcttcaactgtggtgaataattcctcggatccaatttctagccttttaagctcc
ttagttgcaaagggtttgatatctgcatcaaagtcagagtcgctcgctcctgtgccatcc
caaaagccaactgaaccgcaaaacaagagccttggtggacctgccaccagtttagtgtca
gtgtctccagtttcagtttcaacaagtcttcctgtttcatctcgaactgatgatgcatct
ctcccagaacctgcagctaaaacatctgctgccttacctcaaattacgaagacagaaata
agaaacctcattggcgttgagtttaagccagataaaatccgagaattccatccagccgtg
attgatgaactttttaatgaccttccacataagtgtagcatatgtggccttaagctcaaa
cttagagaacgacttgagagacacttggaatggcatgcttcgaaaaatcccaaagccaat
ggttcagctatggcatcaaggaagtggtatccaaatttaaccagctgggttgctggaaaa
gcaggaccccctttggtacctgaggccaacaattcaatagacgagcctaatgagacgatg
gacattgatgagcccatggttcccgcagacgaaaaccaatgtgcatgtgttatatgtggc
aatatttttgaagatttttatcgtcaagaaagggatgaatggatgttcaaaggagcttcg
tacatgagtattccatctggggccggtgagatggaaaccacagaggagagtgttttgaag
ggtcccattgtgcatgtaaattgtacagtggaaagttcactctctgatttgggattgccg
ggccatgttaaattggaaccggaaatttag
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