Pyrus communis (pear): 137713010
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Entry
137713010 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137713010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137713010
03012 Translation factors [BR:
pcox03012
]
137713010
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137713010
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137713010
Translation factors [BR:
pcox03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137713010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
Dicer_dimer
NPHP3_N
AAA_30
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
137713010
NCBI-ProteinID:
XP_068308339
LinkDB
All DBs
Position
13:24920326..24928307
Genome browser
AA seq
1229 aa
AA seq
DB search
MPYSALFQGYIFRTTTMSLKPSTTSTTTVLVSFRGTHDRRRHVTLVRPSMLLGCSMRNSR
YHHTHCLAPPLIWNACYYLPRHVGDVACQASSRAAELDWKQRKQLRSSAVPFYQQNLSYG
RFAYQDASASEESDAELGSSQRQMGGSTLDNIDEWRWKLTMLLRNKDEQELVSRERKDRR
DFDHLSALASRMGLHSRQYSRVVVFSKVPQPNYRPDLDDKRPQRQVVLPFGLHREVDAHL
KAYLSQKPMSQGNVSDLSLSRSNSSRSITNDGGHYEQQEPLIQNTDAMEKILQRKSLQLR
NRQRHWQESPEGQKMLELRKSLPAYKKKDALLKAVSENQVLVVSGETGCGKTTQLPQYIL
ESEIEADRGASCSIICTQPRRISAMAVSERVAAERGENLGESVGYKVRLEGMKGRDTRLL
FCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT
LNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTGYQLNQYNQIDDYGHEKSWKMQK
QAQGFKKRKSQIASSVEDVLEAADFREYSPRTQESLSCWNPDSIGFNLIGNLLLHIVRKE
RPGAILVFMTGWDDINSLKDQLQAHPLLGDPGRVLLLACHGSMPSSEQKLIFDKPEDGVR
KIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGR
VQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPPEPL
SVQNAVEYLKIIGALDDNEDLTVLGRHLSVLPVEPKLGKMLILGSIFNCLDPVMTVVAGL
SMRDPFLTPHDKKDLAESAKAQFSAHENSDHLALIRAYDGWRSAERTQSGYEYCWRNFLS
VQTLKAIDSLRKQFFFLLKDAGLVDHNTENCNTWSHDEHLVRAVICAGLFPGICSVVNKE
KSIMLKTQEDGQVMLYSSSVNGNIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFG
GNISRGGLDGHLKMLGGYIEFFMNPTLAETYLCLKRELDELIHNKLLNPKLDMQSHTNLL
SALRLLVSEDQCEGRFVFGRKVPVPSKNATQEKVPKLKGTMKKVAENNNYKNHLQTLLTR
AGHDAPTYKTKPLKNNQFRSSVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLKGENHSSS
TDIDHMSMLLKKSRKKSQKRTSFDSAKWG
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactccgccctcttccagggatatatattcaggaccaccaccatgtccctcaaa
ccctccaccacttccaccactaccgttctcgtctctttccgcgggacccacgaccgccgc
cgccacgtaactttggtaaggccgtcgatgctgctgggatgctccatgaggaacagccgg
taccaccacacgcactgccttgctccgccgctgatttggaatgcgtgctattatctgccg
cgtcatgtcggggacgtcgcgtgccaggcatcgtctcgggcggcggagctggattggaag
cagaggaagcagctgaggagttcggcggtgccgttttaccagcagaatttgagctatgga
cggtttgcgtaccaggacgcctccgcgagtgaggagtccgacgccgaactggggtcgtct
cagcgccaaatgggtggttcgacccttgataacattgacgaatggagatggaagttaacc
atgcttcttcgcaacaaagatgagcaagaattggtgtccagggaaagaaaggatagacgc
gattttgatcatctttcagcactggcaagtaggatgggtttacatagccgtcagtattct
agagttgtagtatttagcaaagttcctcagccaaattacagacctgatctggacgataag
cggccacaaagacaggttgtcttaccttttggacttcatagagaagtagatgctcatctc
aaagcctacctatctcaaaagccaatgagccaaggaaatgtatcagacctttccttgtca
agatcaaacagtagtagaagcataactaatgatggaggacattatgagcagcaggagccc
ttgatacagaatactgatgccatggagaaaattcttcagcggaaaagcttgcaactgcgt
aataggcaacgacattggcaggaatctccagaaggtcaaaagatgcttgaacttcgtaaa
agtctgcctgcatacaagaagaaagatgcgttgttaaaagctgtgtcagaaaatcaggtc
ttagttgtctcaggcgaaacaggttgtggtaaaactacgcagctccctcagtacatttta
gaatctgagattgaagctgatcgtggagcgtcctgcagtattatttgtacccagcctaga
cggatatctgccatggctgtttctgaaagagttgctgcagaacgaggggagaatctgggg
gaatctgttggttacaaagttaggcttgaagggatgaaagggcgggacacccggcttctt
ttttgcaccacgggtatattattgaggagattacttgttgacagaaagttgagaggtgtt
acacatgtcattgttgatgagattcatgaacgcggaatgaatgaagattttcttcttatt
gttctgaaagaacttctccctcgccggccagagttgaggttgattttgatgagtgccacc
ctaaatgctgagcttttctcctcctactttggtggtgctccaatgatccatattcccggg
tttacatacccagtccgagcacattttctggagaatattctagaaatgactgggtatcag
ttgaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaaatgcagaaa
caagctcaaggtttcaaaaagaggaagagccaaattgcttctagtgttgaggatgtactt
gaagctgctgactttagggagtacagtccaaggactcaggagtctctgtcctgttggaat
cctgactccattggttttaacctcattggcaatcttcttttacacatagtcaggaaagaa
cggcctggcgcaattttggtttttatgacgggttgggatgacataaattccttgaaggat
caactccaagctcatcccctattaggagatcctggcagggtcctattgctagcatgtcat
ggttccatgcctagctctgagcagaaattgatatttgataagccagaagatggtgttcgg
aaaatagttctagctacaaacatggctgagactagtatcactatcaacgatgtagttttt
gttgttgattgtggaaaggcgaaagagacatcatatgatgcactaaataacactccctgt
ttgcttccatcctggatttcaaaggctgcttctcggcaaaggagaggcagagctggtcgt
gttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgcctttgctgat
tatcagttgcctgaacttttgaggactccgttgcaatctttatgtttacaaatcaaaagt
ctacaacttggaagtatttcagagttcctatctaaggccttgcagccacctgaacctctg
tcggttcaaaatgctgttgagtatttgaagatcattggagctttagatgataatgaagat
ctgacagtgttaggacgtcacctgtcagtgcttcccgttgagcctaaacttggaaaaatg
ctcatattagggtctattttcaactgtctggatccagtaatgactgttgtcgcaggcctc
agtatgagagatccattccttacgccgcatgacaagaaggatcttgcagagtcggcaaaa
gcacagttctctgctcatgaaaacagtgatcatcttgctctcatccgagcttatgatggt
tggagaagtgctgaaagaacacagtctggctatgagtactgctggagaaacttcctttct
gtgcaaactctgaaagccattgactctcttcggaagcagttcttctttttgctcaaggat
gcgggtctggttgaccataatacagaaaactgcaatacatggagccatgatgagcatctt
gtccgagcagtcatctgtgctggattattccctggaatatgctctgtcgtgaacaaagag
aagtcgattatgctgaaaacacaggaagatggacaagtgatgctatactcgagttctgtc
aatggaaacatacccaaaattccatatccatggcttgtcttcaacgaaaaggtgaaagtg
aattcggtttttctccgggattcaactggtatatctgattctgtgctccttttgttcggg
ggcaacatttccaggggtggcctggatgggcacttgaagatgctgggaggatacatagag
tttttcatgaatcccacattagcagaaacatatctttgcttaaagagggagcttgatgaa
ctgatccataataagctcctgaatcccaaattggatatgcaatcacacacgaacctccta
tcagcgctaagattactggtctcagaggatcaatgtgagggtagatttgtatttggtcgc
aaggtgccagtgccctcaaagaacgcaacacaagagaaggtaccaaagttaaaaggcacc
atgaagaaagttgcggagaacaataattacaaaaatcacctccaaacattgctcaccaga
gccgggcatgatgcacccacctacaaaacaaaaccattgaaaaacaaccagttccgttcc
tcagtgatcttcaatgggttgaactttgtaggcaaaccatgcaatagtaagaaagaagca
gagaaggacgcagctgctgaagctgtactctggttaaagggagagaatcattcatcgtcc
acagatattgatcatatgtcgatgctacttaagaaaagtagaaagaaaagccagaaaagg
acctcatttgatagtgccaaatggggttaa
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