Pyrus communis (pear): 137713298
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Entry
137713298 CDS
T10779
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137713298
03015 mRNA surveillance pathway
137713298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137713298
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137713298
mRNA cycle factors
P-body specific factors
137713298
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
137713298
NCBI-ProteinID:
XP_068308686
LinkDB
All DBs
Position
1:complement(42721606..42729717)
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AA seq
489 aa
AA seq
DB search
MMKGQLDRTKVVLRHLPPSISQAALVEQIDGFFAGRYSWVAFRPGKKSQKNQSYSRAYID
LKRPEDVFEFAEFFDGHLFVNEKGGQFKVIVEYAPSQRVPEHWSKKDGREGTIFRDPEYL
EFLEFIAKPAENLPSAELQLERREAERSGAGKDAPIVTPLMDFVRQKRASKAGSRRLLSN
GKASRRAGVSSARSPTLPMTKRGSERKKNSASMGLSDLQYVVRDARKNTGDKNKSTHILV
PKREDQQPSKKSATLASAVGTELLEDSGVSGADAGKKKVLLVKGKEKEISHVPPNMSQQQ
SSYSKNIGGSIALNQNPRRHDNGRIIKGILLNKEARQSQSSGIHSGQQIQSSSSDRNKQF
PRSQHVQLILKDTNGAPDHKIVGNDLHDIYSEKQEKRTRNKDRPDRGVWTPLNRLDGSSA
SDESFSSAFQQDHSLLDSSEGSHKHHGRRGAKHVKELDGSPVAGEGKHSKRGYGSHEKQV
WIQKSSSGS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagggccagttggatcgtacaaaggtggtgctgcgacacttgccgccttcgatt
tcgcaagctgcgcttgtggaacaaatcgacggtttctttgctggccgctacagttgggtc
gcttttcgtccgggcaagaagagccaaaagaatcagtcatattctagagcctacattgat
ttgaagaggccagaggatgtattcgagtttgctgaattctttgacggtcatctgtttgtt
aatgagaagggtggtcaatttaaagttattgttgagtatgctccatcacaacgtgttcca
gaacattggtctaagaaggatggtcgtgaaggaaccatattcagagatcccgagtatctg
gagtttcttgaatttattgcaaagcctgctgagaatcttccaagtgcagagttacaattg
gagagaagagaagcagaacgatctggtgctggaaaggatgctcctatagttacaccatta
atggactttgttcgtcaaaaaagggcttccaaagctggatctcggaggttactgtctaat
ggtaaagcaagcagaagagctggtgtatcatctgctcgaagtcctactttacctatgacc
aaacgaggttctgagaggaaaaagaattctgcctcaatgggtctgtctgatttgcagtat
gttgtgagggatgctagaaagaacaccggtgacaaaaacaagtcaacacatatattggta
cccaagcgcgaggatcagcaaccttccaagaagtctgccactttggcatctgcagttgga
accgaattgttggaagatagtggagtttctggtgctgatgctgggaaaaagaaagtcttg
cttgtgaaagggaaagagaaggagatatctcatgtgccgccaaacatgtcacagcagcag
agttcatattctaaaaacataggtggttcaattgcactgaatcagaacccgcgtcgtcat
gataatggaaggattataaaaggcatacttctgaacaaggaggcacgtcaaagtcagtct
tctgggattcactcagggcagcaaatccagagttcgagttcagataggaacaaacaattt
cctcgatcgcaacatgtgcaattgattttaaaggatacaaatggggctccagatcataag
atagttgggaatgacttgcatgatatttatagtgagaagcaggagaaacggacaagaaat
aaggacagacctgatcgtggtgtatggacgcctcttaatcgtttagatggatcatctgca
agtgatgagtctttctcatctgcttttcaacaggatcactcacttttagattcatcagaa
ggctctcataaacatcatggtcgccgtggagcaaaacatgttaaggaacttgatggctca
ccagttgcaggtgaaggaaaacattcgaagagaggctatggctcccacgagaaacaagtg
tggattcagaagtcgagttctggttcctaa
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