Pyrus communis (pear): 137713632
Help
Entry
137713632 CDS
T10779
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pcox Pyrus communis (pear)
Pathway
pcox03022
Basal transcription factors
pcox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
137713632
09124 Replication and repair
03420 Nucleotide excision repair
137713632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcox03021
]
137713632
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137713632
Transcription machinery [BR:
pcox03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
137713632
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
137713632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
137713632
NCBI-ProteinID:
XP_068309061
LinkDB
All DBs
Position
1:42982686..42991441
Genome browser
AA seq
597 aa
AA seq
DB search
MSSSSSRRVVKRVKYKDAVKNPGTPGVLTMVENRFLFKPNDPTSARMLDVEFRHIKGHKN
TKEGSKQPPLLNLSSSSREGISYIFEFQSYPDLHECRDFVGNALSKATETAKTASERDGV
TFPDEQLSAAEMELRMKLLQEDSELQKLHMQFVISGVLTESEFWATRKKLLDGDSRTKPK
QRVGFKNSMILDTKPTSDGRMNKVTFNFTPEIKYQIFALKPAVHQAFLKLVPSKMTEKDF
WTKYFRAEFLHSTKNAATIAAEAAEDEELAIFLKEDEIVAREARQKIRRVDPTLDMEADQ
GDDYTHLPDHGIFRDGSKDITELQNEQYRRTLLQDLNRQGAVVLQGRTVDGDLEDPENVA
EALMRSRQEPEESAVQERLDRITRMNEIDDLREPHDHPVAQLCIKDPRDYFDTQQANALK
TLDDSRIGTEQKKCSMTTEEAYGSLRESISKIKSIGLKNSTVEPEIALTVLNGLTQNISS
TKYQLGKNPRESILDSLPSRTKEELLHHWMSIQELLRHFWSSYPITTAYLSTKVGKLKDA
MSQIYRQLEEIKESDFRHQVSLLVRPMHQALDAAFQHYESDLQKRAARSAEMPNGNA
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcgtcgtccaggcgagtcgtgaagcgtgtaaaatacaaggatgcagtaaaa
aaccctggcactcccggcgttttaactatggttgagaacaggtttttgttcaagccaaac
gatcccacgtctgccagaatgcttgatgtggagtttagacatattaaaggtcacaaaaac
actaaggagggatccaagcaaccacctttgcttaatctcagcagcagcagtcgtgagggt
ataagttacatttttgagtttcaaagttatcccgatcttcatgaatgccgagattttgta
ggcaatgccctatctaaggctacagaaactgcaaaaactgcttctgagagagatggagtt
acattccctgatgaacaactcagtgcagcagaaatggagctccgtatgaagttattgcaa
gaagacagtgaattgcagaaacttcatatgcagtttgtaatcagtggtgtcttgacagaa
tctgagttctgggcaactaggaagaagttgcttgatggagatagccgtacaaagccaaaa
caacgggttggttttaaaaattcaatgattttggacaccaaacctacaagtgacggtcgg
atgaacaaggttacatttaatttcactccagagattaaatatcagatctttgctctcaaa
ccagctgttcaccaggcatttcttaaactagtgcccagtaagatgacagaaaaagacttc
tggacaaaatatttcagagctgaattcctccacagtaccaagaatgccgctacaattgca
gcagaagctgccgaggatgaggaactggcaatttttttaaaggaggatgaaatagtggca
agggaagctcgtcagaagattcgacgggttgatccaactttggatatggaagctgaccaa
ggggatgattatacacatcttcctgatcatgggatttttcgtgatggtagcaaagacatc
actgaactgcagaatgagcagtacaggaggactttattgcaagaccttaacaggcaaggg
gctgttgttcttcaaggaagaactgtcgatggggatttagaagatccagaaaatgttgca
gaggcacttatgcggtcaagacaggagcctgaagagagtgctgtgcaggagagacttgat
aggattactcggatgaatgagatagatgaccttagagagcctcacgatcatcctgttgct
caattatgtattaaggatcctcgagactactttgacacgcaacaagctaatgcacttaaa
actttggatgactcacgaattggaactgaacagaaaaaatgcagcatgactactgaggaa
gcatatggctcattgagggagtctatatctaaaattaagagcattggattgaaaaattcc
acagttgaaccagaaattgctcttacggttcttaatgggctgactcagaatatttcaagt
accaagtatcaacttggaaagaatcctcgggagagtattctggacagtttgccgagcaga
acgaaagaggaactgctgcatcattggatgtccattcaagaattactgaggcatttttgg
tcttcatatccaattacgacagcttatctttctacaaaggtaggcaaactgaaagatgcc
atgtcacaaatctatcgacagctagaggagataaaggaatcagacttccggcaccaggtt
tcactccttgttcgtccaatgcatcaggctcttgatgcggcctttcaacattatgaatct
gacttgcagaaaagagctgcaaggagtgcagagatgccaaatggaaatgcgtag
DBGET
integrated database retrieval system
