Pyrus communis (pear): 137715413
Help
Entry
137715413 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137715413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137715413
03009 Ribosome biogenesis [BR:
pcox03009
]
137715413
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137715413
Spliceosome [BR:
pcox03041
]
Complex A
U1 snRNP components
U1 related factors
137715413
Complex B
137715413
Ribosome biogenesis [BR:
pcox03009
]
Eukaryotic type
Pre-60S particles
Helicases
137715413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
PRAI
Motif
Other DBs
NCBI-GeneID:
137715413
NCBI-ProteinID:
XP_068310841
LinkDB
All DBs
Position
14:complement(3390254..3395759)
Genome browser
AA seq
574 aa
AA seq
DB search
MSYVPPHLRSSSRTTTTITTTTAAEASSRTLDDQSKLSYSSSNYHFSNDKSSSGGASSSS
FSHSNASSRWSSGALSQASRARPDSVVPQWKPSDRVLRMNPEMIEEVCLRLNLDVSVSSD
SAPAPAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPVALSGRDLLGCAETGSGKT
AAFAIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFGASLESFRTAIVVGG
TNISEQRSELRAGVDVVVATPGRFIDHLQQGNTSITRISFVVLDEADRMLDMGFEPQIRE
VMRNLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEK
TDQLLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALAAQGLHAVTLHGGRTQTE
REAALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMG
QSTSFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAQKQARVALSKSS
IAGPTSVNIEDKYRFMFADSNNKKEGAADSAWDD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtgcctccgcacctgaggtcgagctcaagaaccaccacgacaatcaccact
accaccgccgccgaagcctcgtctcgaaccctagacgatcagagcaagctctcctactcc
tcctccaactatcacttcagcaacgacaagtcgtcgtccggtggtgcttcctcctccagc
ttctctcactccaatgcctcctctcgctggagctccggcgctctctcccaggccagcaga
gctcgcccggactccgtcgtccctcagtggaagccctccgaccgcgtcctccgcatgaat
cctgaaatgattgaagaggtttgtttgcggcttaatttggatgtttctgttagttccgac
tctgctcctgctccggcaccgatcgagtcttttacagatatgtgtttgcaccctagcatc
atgaaggatatcgacaatcacggatacaccacaccgacatccattcaggctcaagctatg
ccggttgctctcagtgggagggacttattaggttgtgctgaaactggcagtggaaaaact
gctgcattcgccattcccatgatacagcattgcttggctcaacctcctgttcagcgtggt
gatggaccactagctctggtattggctccgactagagagcttgcccaacaaattgaaaag
gaggtcaaagcgtttggtgcatctctcgagtccttcagaactgcaattgtggtgggtgga
accaacatatctgagcagaggtctgagctacgagcaggagttgatgtagtggttgctact
cctggaagatttatagatcatttacaacaagggaacacttctatcactagaatttcgttt
gttgttttagatgaagctgatagaatgcttgacatgggatttgaaccacagataagagag
gtgatgcggaacctttctgaaaagcatcaaactttgctgtttagtgcaactatgcctgaa
gagatcgaagaattagctcaggaatacttgactaaaccagtgcaagtgaaggtgggaaaa
gtgagtagccctacagcaaatgtgactcagactttggagaaggttcctgagagtgagaag
actgatcagctattggctttgctcgtagaagaggcatctcgggttgaaggaactggccat
ccctttcccttaacaattgtgtttgttgaaaggaagacgagatgtgacgaagttgctgaa
gctttggcagcacaagggttgcatgcagttactcttcatggtggtcgtacacaaactgaa
agagaggctgctctacgtgattttagaaaaggcactaccagtattttggttgccactgat
gttgcgtctcgcggtttggatgtctcaggagttgcacatgttatcaatttggatcttcca
aagagcatggaagattatgtacaccgaattggaaggacgggaagagcaggatcaatggga
caatctacttccttttacacggatcgtgatatgttcctcgtggcaaatataaagaaagca
atatcagatgctggatctgggaatgctgtggcttttgcaactgggaagactgcaagaagg
aaagaaaaagaagcagcagctgctcaaaagcaagctagggttgctttatccaaaagctca
atagcgggaccaacatcagtaaacattgaggacaagtatcggttcatgtttgcagattcg
aacaataaaaaagaaggggcagcagatagtgcttgggacgattga
DBGET
integrated database retrieval system
