KEGG   Pyrus communis (pear): 137715505
Entry
137715505         CDS       T10779                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
pcox  Pyrus communis (pear)
Pathway
pcox03013  Nucleocytoplasmic transport
pcox03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcox00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137715505
  09122 Translation
   03013 Nucleocytoplasmic transport
    137715505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcox03019]
    137715505
   03041 Spliceosome [BR:pcox03041]
    137715505
Messenger RNA biogenesis [BR:pcox03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     137715505
Spliceosome [BR:pcox03041]
 Complex C
  Other components
   EJC/TREX
    137715505
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    137715505
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR19_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_Vps41 DSE1_N eIF2A WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR75_1st Tricorn_2nd Beta-prop_EIPR1 Beta-prop_IFT140_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_DCAF12 TP_0598_N Beta-prop_IFT80_2nd PAC11 Beta-prop_IFT122_2nd TRM82_WD B-prop_COPA_B_2nd Beta-prop_ELP1_1st Beta-prop_WDR41 DUF7099 Beta-prop_Nup120_160 PD40
Other DBs
NCBI-GeneID: 137715505
NCBI-ProteinID: XP_068310952
LinkDB
Position
14:complement(2605978..2609163)
AA seq 379 aa
MAETEEPTIPFKNLSSREYLGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKA
KDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCAQLAELSGENINITYK
PDGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWSTTSEIFFLTTGNGTVEVLA
YPSLKPVDTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDISEMLCVKTFPKLESPVR
TISFNHTGEYLASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKSNLLAYAGDDKN
KYQTDEGVFRILASKVQPKLCASLLACNWSSCACDATVVVLNLHYVQKTSMLIVLFSRRS
AATGMTVEVCLYYLFSTRG
NT seq 1140 nt   +upstreamnt  +downstreamnt
atggcagaaacggaggaacccacaataccctttaagaatctgagtagcagagagtacctg
ggccacaagaagaaggtgcattctgtggcttggaactgcacggggacgaagctcgcgtcg
ggttctgttgatcaaaccgctagggtttggcacattgagccccatggacatggtaaggct
aaagatattgaattgaaggggcacacagatagtgtggatcagctgtgttgggaccccaag
catgctgatttgattgccactgcctctggggacaagacggttcgtctttgggacgctcgg
agtggaaaatgtgcacagctagcagaacttagtggggagaacataaatatcacctataaa
cctgatgggacacacatcgccgttggtaatagggatgatgaacttacaattttggatgtt
cggaagtttaagccaattcacaaacgaaagttcaattatgaggttaatgaaattgcttgg
agcacaacaagtgaaattttcttcttgacaactggaaacggtacggttgaagtactagca
tacccatctcttaaaccggtcgatactctcatggctcatacagctggttgttattgcatt
gccattgacccacttggaagatattttgctgttgggagtgctgattccttggtcagcctg
tgggatatctcagagatgctctgtgtgaaaacatttccaaaacttgaatcacctgtgagg
acaataagcttcaaccacactggagagtatcttgcgtctgccagtgaagacttattcatt
gacatatcaaatgttcaaaccgggcggacagtacatcagattccatgtagggcagccatg
aacagcgttgagtggaatcccaaatccaatctacttgcatatgctggagatgacaagaac
aaatatcaaactgatgaaggtgtttttaggatattggcttcaaaagtgcaacctaaatta
tgcgcttctcttttggcctgtaattggagcagttgtgcatgtgacgcgactgttgtggtt
ctgaacttacattatgttcaaaaaacgagtatgctgatagttctattttcaagacgaagt
gcagccactggtatgaccgtcgaagtctgtttgtactatttattctcaacacgaggctga

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