Pyrus communis (pear): 137717420
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Entry
137717420 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137717420
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137717420
Spliceosome [BR:
pcox03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137717420
Complex C
U4/U6.U5 tri-SnRNP related factors
137717420
Ribosome biogenesis [BR:
pcox03009
]
Eukaryotic type
Pre-60S particles
Helicases
137717420
Transfer RNA biogenesis [BR:
pcox03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137717420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137717420
NCBI-ProteinID:
XP_068312887
LinkDB
All DBs
Position
15:23868632..23875898
Genome browser
AA seq
1000 aa
AA seq
DB search
METEAASLKRKSEGEAELEEAPQKQQKRDNGWASVDDEAVACLHDVSYPEGYVVPPPSSS
SSAAAEASEPAKKFPFPLDPFQSEAINCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNK
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEI
TREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQ
PCHIVYTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALNALAPTADSAKKKEN
GKWQKGLIMGKAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMAKMDLNGDNE
KENVETIFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLI
KCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICI
LMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADR
AIPSLEKQAKDLEKERDSIIIEEEDSVKNYYNLLQQYKSLKQELHDIVLSPKYCLPFLKP
GRLVSIQCAKSDESSPSFSIEDLVTWGVILNFQRVKTASEDDASRKPEDSNYTVDVLTRC
RVSTDEVAKKTIKIIPLKEAGEPAVVSISISQINSMSGLCMVIPKDLLPLPARENTLKRV
LETMSRFDKGKIPLLDPEEDMKIESSSYKKVSRRIEALENLFDRHEVARTPLIEQKLKVF
HMKQDLAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTNDGVVELKGKVACEISS
AEELTLTELMFNGAFKDINVEEMVSLLSCFVWQEKLKEATKPREELDLLFSQLQDTARRV
AEVQLECKVEIDVDSFVSSFRPDIMEAVYAWAKGSKFYEIMSATPVFEGSLIRAIRRLEE
VLQQLIQAAKSIGETELESKFEEAVLKIKRDIVFAASLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggaagcggcatccctgaagaggaagtcggagggagaggccgagttggaagaa
gctccacagaaacaacaaaagagggacaacggttgggcaagcgtcgacgacgaagcggtg
gcctgcttgcacgacgtgtcgtatcctgagggctatgtcgttcctcccccttcttcttct
tcttcagctgcagcagaagcttctgaacctgccaagaaattccccttccctctggaccct
tttcagtctgaggccataaactgcctcgaaaaagccgagtccgtcatggtgtctgctcat
acgtcggctgggaaaactgtggtggcatcgtatgcgattgcaatgtctctaagaaacaag
cagagagtgatatacacttcaccaatcaaagcactgagcaaccaaaagtatagagagttc
aaagaggagttttccgacgttggcttgatgacgggcgatgtaactatcgaccccaatgct
tcctgcttggttatgacaacagaaatctggcgtagcatgcagtacaaagggtcagagata
acgcgtgaggtggcgtggattatcttcgatgaggtgcactatatgcgtgatagggagaga
ggtgtggtgtgggaagagagcattgttatggctccaaagaatgctcggtttgtgttcctc
tcagcaactgtgccaaatgctaaggaatttgctgattggcttgcaaagattcaccgtcag
ccttgtcacattgtctatactgattataggccaactcctctgcagcattatatttttcct
tctggagggaatggattgtacttggtagtagatgaaaaagggaaatttcgcgaagacagc
tttcagaaggctcttaatgctcttgctcccactgccgatagtgctaagaagaaggaaaat
ggcaagtggcaaaagggtttgatcatgggcaaggctgctgaggaaagtgatatcttcaag
atggtcaaaatgataattcagcgtcagtatgatcctgtaatactttttagctttagcaaa
agggagtgcgaatctcttgcaatgcagatggcaaaaatggatctaaatggggacaatgag
aaagaaaatgtagaaaccatcttctggagtgctatggatatgctttctgatgatgataaa
aagttacctcaggtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcat
tctggcttgcttccaattctaaaggaagtgattgagatattatttcaggaaggcctaatc
aagtgtttgtttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgtt
gtgtttaccaatgtccggaaatttgatggtgataagttcagatggctatccagtggagag
tatatacaaatgagtggccgtgctggtcgccgtggtattgataagcgtggaatatgtata
cttatggtagatgagaagctggaaccatctactgctaaaatgatgcttaaaggaagtgct
gattgtttgaacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagc
gaagatggtaatccagaaaatttgcttcgtaactcgttctatcaatttcaagctgatcgt
gccatccccagtcttgagaagcaagcaaaggatcttgagaaagagagggattcaattata
attgaagaagaagatagtgtaaagaattattacaatctgttacagcaatacaagagtttg
aaacaggaacttcatgatattgtgctttctccaaagtactgcttaccatttctgaaacct
ggtaggcttgtctcaatccaatgtgctaaaagtgatgaaagttccccttctttttccatt
gaggacctggtcacatggggagtgatactaaattttcaacgggtgaaaactgcttcagaa
gatgatgcaagtagaaaacctgaagattcaaactacacagtggatgttctgacaaggtgc
agggtaagtacagatgaagttgctaagaaaaccatcaaaattatccctctcaaagaggca
ggagaacctgctgttgtctccatttccatatctcagataaatagtatgagtggactttgt
atggtcattcctaaggatcttttgccactaccagctcgagaaaacacactgaagagagtt
cttgaaactatgtcaagatttgataaaggaaagattcctcttctcgatccagaagaagat
atgaagattgaaagtagttcatacaaaaaggtgtctcgtaggatcgaggcgttagagaac
ctgtttgacaggcatgaagttgctagaactccacttattgagcaaaagcttaaggttttt
catatgaagcaggatttggctgccaagatcaagtcaatcaagaaaacaatgcgctcgtcc
actgcattagcttttaaagatgaactgaaggcaagaaaacgggtccttcggaggctagga
tatgttacaaatgatggtgttgtggagttgaagggtaaagttgcttgtgaaatcagtagt
gcagaagagttgaccctgactgagctcatgttcaatggggctttcaaggacataaacgtg
gaagagatggtttctcttctctcatgttttgtgtggcaggagaagcttaaggaagctaca
aaaccaagggaagagcttgacctgctattttcacaattacaagatacagctcggagggtt
gctgaggttcagctcgagtgcaaggtcgaaattgatgttgacagctttgtgagttctttt
cggcctgatattatggaggctgtgtatgcttgggcaaaagggtccaaattctacgagatc
atgtcagctacacctgtttttgagggcagcttgatcagggcaattaggagattagaggaa
gtccttcagcaacttattcaagcagccaagtctattggagaaaccgagcttgagtcaaaa
tttgaggaggccgttttgaagatcaaaagggacattgtctttgcggcttccctatacttg
taa
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